PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017112001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 356aa    MW: 40630.9 Da    PI: 4.7985
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017112001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81e-16132216286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        Wt++e+ +L++a  ++  +l+r++l+   W+ev++k+ re   er+ +qC+++++ l+k+ykk++  +++ t + +++++yf++++
  GSVIVT01017112001 132 WTEHETFVLLDAWGDRFLKLGRKSLRSEEWQEVAEKVsRESRTERTDTQCRNRLDTLKKKYKKENMKSGE-TGGGTNKWVYFKKMD 216
                        *************************************888999**********************99998.689999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-594102IPR009057Homeodomain-like
PfamPF138373.5E-22131218No hitNo description
PROSITE profilePS500906.377132189IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-5157201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLASSTNLSP ECSLTRLSSF LFSNAKTLET LGIDEIRVSN VRIPCSKEEE DDDDDDEDDN  60
NDNDNDEDED HDNQKDHTRR VEDVSLERHQ KKRKLKSLIS SYEFAPRVAV PSAVAAPAPK  120
PSFGGRNSLT DWTEHETFVL LDAWGDRFLK LGRKSLRSEE WQEVAEKVSR ESRTERTDTQ  180
CRNRLDTLKK KYKKENMKSG ETGGGTNKWV YFKKMDMLMS AAPLYLNRPN GLDEMRDSPG  240
NSGSSGGEED DSDGLPPKRK SCGQDNNEGS SFRLLANSIQ KFSEIYEKIE NSKRQQMVEL  300
EKMRMDFHRD LELQKRQIVE RAQAEIAKIR QGDDEETEVS TENVNPRSCY LFVVP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13560.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4574850.0AM457485.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X142082.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279835.11e-167PREDICTED: trihelix transcription factor ASIL1
TrEMBLF6HX151e-165F6HX15_VITVI; Uncharacterized protein
STRINGVIT_09s0002g04700.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-63Trihelix family protein