PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017050001
Common NameVIT_09s0002g04120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 330aa    MW: 35750.8 Da    PI: 6.7651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017050001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000421942321255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  GSVIVT01017050001 194 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 232
                        6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-7192240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-5192236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAGNPNWWSM NNMRPPSSQQ SSSAFLSPPT LFSPRYVPES SSSLPFNSLA DTPDLPHSWS  60
QLLLVGSSGE EDRFGSSDFQ AKNVEWEDQI LNTSQRIPAV DVKQEVVSQS SHPYNHGDEG  120
FQTSRPPWSQ IMPVSSPRSC VTNLSTNILD FSNKAGVRNQ HADHSTECNS TATGGACKKA  180
RVQPSPSQPP LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS  240
PYLGNASGNM RNQQCVQGEM NCIFPKDPGQ LLNDNCLKRK GSAPNQQDTQ DAPKDLKSRG  300
LCLVPVSCTQ QVGSDNGADY WSPALGGGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.123610.0flower| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516601e-170AM451660.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X260730.14, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284327.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D12e-79BH068_ARATH; Transcription factor bHLH68
TrEMBLD7U0G30.0D7U0G3_VITVI; Uncharacterized protein
STRINGVIT_09s0002g04120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]