PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017011001
Common NameLOC100254963, VIT_09s0002g03750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 284aa    MW: 31181.8 Da    PI: 7.5657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017011001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.5e-17179213135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  GSVIVT01017011001 179 CLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 213
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-772265IPR016679Transcription factor, GATA, plant
SMARTSM004016.6E-16173223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.004173209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.4E-14174210IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.66E-14175237No hitNo description
CDDcd002024.96E-12178225No hitNo description
PfamPF003207.1E-15179213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTDGFFDTVT GNSTDSSTVT VVDSCNSSLS GNEPHFSGDV GCRNFTDAQF SGELCVPCDE  60
LAELEWLSNF VEESFSSEDL HKIQVLSGIK APLHTTESPE PQFQPETARS EPILQPPMNV  120
PGKARSKRPR SVPCDWSTRL LVLSPATSSS ESDAFKKPPK TTSSKKKENS DSAGDGRKCL  180
HCAAEKTPQW RTGPMGPKTL CNACGVRFKS GRLVPEYRPA SSPTFVSAKH SNSHRKVLEL  240
RRQKDLQRSH HHQFLGQTSI FSATNGDDYL IHHHAGPDFR HMI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.237280.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4813230.0AM481323.2 Vitis vinifera contig VV78X039924.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284028.10.0PREDICTED: GATA transcription factor 9
SwissprotO826323e-79GATA9_ARATH; GATA transcription factor 9
TrEMBLF6HYB50.0F6HYB5_VITVI; GATA transcription factor
STRINGVIT_09s0002g03750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-79GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]