PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016800001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36270.2 Da PI: 7.4185 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W++++r g+ R++k+c++rw +yl GSVIVT01016800001 14 RGLWSPEEDEKLINYISSYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++++ lG++ W+ Ia++++ gRt++++k++w+ GSVIVT01016800001 67 RGSFSPQEAALIIELHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.819 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.384 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.67E-12 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS SYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHRILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLVSHG 120 VPDLATFPDI PNPNASPEAF FSLNGNPNLI PSPQDHQLYL PSPTSMLQSG FDLANYNLEF 180 VHFQPPPAPP LPDPSSYDPT WPWGCHPHLN QEDYVLGNEV GPIYIETKPI NPNFSLPSFN 240 SPSMAPMMPK LSETISGNDR ILPSSSFPHE VVDPVARLPS LPSGSHPHAP HRAWYWPNCS 300 SIINVFDEGA YLYSFDRMHL LL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM476581 | 0.0 | AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274626.1 | 0.0 | PREDICTED: myb-related protein 305 | ||||
TrEMBL | F6HXY9 | 0.0 | F6HXY9_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g01670.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 4e-80 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016800001 |