PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016790001
Common NameLOC100249800, VIT_09s0002g01590
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YA
Protein Properties Length: 337aa    MW: 36909.1 Da    PI: 9.3269
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016790001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.64.9e-29180236158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +e +++N+KQy++I++RR++Rakle++++   k+rkpylheSRh hAl+RpRg gGrF
  GSVIVT01016790001 180 EEVIFINPKQYNGIMRRRKHRAKLEAQTNP-VKARKPYLHESRHLHALKRPRGAGGRF 236
                        589**************************9.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-30178239IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.98179239IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-20182204IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.7E-25182236IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-20213236IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQHLCKNDFH VNSARPTSPC DASSPHWWTS SETNTQQSSL PKFSRLKIGT QTIDYHSTKE  60
LGSQVRDQDS PSTRSTGQSY PGVLHWGGNN THGQSIFSAH LGYKETHGKP MVSIGNQDYL  120
FTPSQVDCNQ LTARIPITAT EIYHCDLLAP AYGTKAMIHH PQMMGMAPSR VPLPVLNPQE  180
EVIFINPKQY NGIMRRRKHR AKLEAQTNPV KARKPYLHES RHLHALKRPR GAGGRFLNMS  240
KLQEPKPSSP STDALIAGSA QPPFNGNTAS ESEVHQPENN REGASTTSCS DVTSGSNSDD  300
VFLQPEFRFS TYPPHIGGSM KRNDSGSNNL GGSGLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-14180252274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.151850.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4322160.0AM432216.1 Vitis vinifera contig VV78X214798.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274458.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_010654479.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLD7TZV20.0D7TZV2_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01590.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-51nuclear factor Y, subunit A3