PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016762001
Common NameVIT_09s0002g01350
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRF
Protein Properties Length: 364aa    MW: 40956.4 Da    PI: 8.4792
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016762001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.43.3e-2575118144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  GSVIVT01016762001  75 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
                        79***************************************997 PP
2QLQ552.5e-19940132
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
                       s+FTa+Q+q+L++Q+l++Ky+++++P+P++L+
  GSVIVT01016762001  9 SPFTASQWQELEHQALIFKYIVSGVPIPADLI 40
                       89****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-9945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.0181045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-141040IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9875119IPR014977WRC domain
PfamPF088791.3E-2076118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMMSARNRSP FTASQWQELE HQALIFKYIV SGVPIPADLI CTVKRSLDSS LSSRLFPHQP  60
IGWGCFQMGF GRKADPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVI  120
SATNPSPTIS SINSNPSSTT TNSYSLSPLS PLSSSMTSET SHPHHHSYHN TSLYPFLYPH  180
PSSSRPPGSC LSPQATSSYS THHLFLDSGS YSQADRDYRH HHGMREGVDE RAFFPEASGT  240
VRGLHDSYTP LTMSSSKGYS HFQYQSPADN PKQQQEQQEQ QHCFVLGTDF KSSRPIKVER  300
DGEAQKPLHH FFGEWPLKNR DSWLDLEEDP PTHASFSTTQ LSISIPMSSH KLLASDSRIQ  360
TDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302110.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680350.0AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654438.10.0PREDICTED: growth-regulating factor 1
RefseqXP_010654439.10.0PREDICTED: growth-regulating factor 1
RefseqXP_010654440.10.0PREDICTED: growth-regulating factor 1
TrEMBLA0A438K7060.0A0A438K706_VITVI; Growth-regulating factor 1
STRINGVIT_09s0002g01350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-54growth-regulating factor 5