PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016753001
Common NameLOC100261706, VIT_09s0002g01190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 505aa    MW: 56037.4 Da    PI: 4.9219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016753001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS263.38.4e-811214952374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL  cA+a+++g+l+++q+lL  l+elas++gd+++Rla + ++AL+++l++     + ++ p + s+++      +l  f+evsP++ f
  GSVIVT01016753001 121 EQLLNPCATAITAGNLSRVQHLLYVLHELASSTGDANHRLADHGLRALSHHLSS-----SVSVGPITFSSTEPRFFQRSLLKFYEVSPWFAF 207
                        689**************************************************9.....33344555554444555555556********** PP

               GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAee 171
                         + +aN  Il+ ++g     + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T++++ + +          +    +   rL +fA++
  GSVIVT01016753001 208 PNNIANTSILQILNGVpsrsRNLHILDIGVSHGVQWPTLLEALSRRSgGPPPLVRLTVIAATSDNdqntetpfsIAPPGDNFSARLLSFAKS 299
                        *************9987777899************************55666*******99776677777777667778899********** PP

               GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflea 260
                        +++++++n l  + l++l+++ ++++p+E+l+V+ +++lh+l    +++++er+e+Lk++++l+P+ v+++e+++d+   n ++F+++f++ 
  GSVIVT01016753001 300 MNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLN---HNTPDERTEFLKVLRKLEPEAVILSENNMDCsctNCGDFATGFSRR 388
                        *********9999*****************************8...77777889*******************9776447888********* PP

               GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                        +ey ++++ds++a +    + r + Er++++ e+  ++++ g++    +e +ekW er++ +GF    ++e+a + a++ll+k++ ++++rv
  GSVIVT01016753001 389 IEYLWKFLDSTSAAF----KGRESEERRVMEGEAARALTNPGEM----NEGKEKWCERMRGVGFAGEVFGEDAIDGARALLKKYDsNWEMRV 472
                        ***********7775....6677777777777899999999999....99***********************************9999*** PP

               GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                        ee++g++ l Wk+ p+ ++S Wr
  GSVIVT01016753001 473 EEKDGCVGLWWKGLPVSFCSLWR 495
                        **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.24494474IPR005202Transcription factor GRAS
PfamPF035142.9E-78121495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MTIEEPEPNP TSDHILDWLE DSVSFLPSFL DDPYGSGDIS SYQWWDQGQE LDQDFTSYTD  60
NSINCNSAAV AGAVTPCDPA SVDHLQLSDS SKKRKSPDDP APRATGNNCN NSNSKEGRWA  120
EQLLNPCATA ITAGNLSRVQ HLLYVLHELA SSTGDANHRL ADHGLRALSH HLSSSVSVGP  180
ITFSSTEPRF FQRSLLKFYE VSPWFAFPNN IANTSILQIL NGVPSRSRNL HILDIGVSHG  240
VQWPTLLEAL SRRSGGPPPL VRLTVIAATS DNDQNTETPF SIAPPGDNFS ARLLSFAKSM  300
NINLQINRLD NHPLQSLSPQ LIDTSPDETL IVCAQFRLHH LNHNTPDERT EFLKVLRKLE  360
PEAVILSENN MDCSCTNCGD FATGFSRRIE YLWKFLDSTS AAFKGRESEE RRVMEGEAAR  420
ALTNPGEMNE GKEKWCERMR GVGFAGEVFG EDAIDGARAL LKKYDSNWEM RVEEKDGCVG  480
LWWKGLPVSF CSLWRLEDTK PNNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-4011449581473Protein SHORT-ROOT
5b3h_B3e-4011449527419Protein SHORT-ROOT
5b3h_E3e-4011449527419Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4424680.0AM442468.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X278993.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273108.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLF6HXW00.0F6HXW0_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-170GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]