PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016523001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 595aa    MW: 66776.2 Da    PI: 6.4556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016523001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS50.44e-16275346172
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsek 72 
                        l++lL+ cA+av+++d + a++ L++++++a p gd +qR+a yf+++L+arla+s++++yk + +++++ +
  GSVIVT01016523001 275 LRTLLTLCAQAVAADDRRSANEQLKQIRQHACPMGDGVQRMAYYFANGLEARLAGSGTQIYKGILTKPSAAN 346
                        5789**********************************************************9988887654 PP
2GRAS186.61.7e-57344522105282
               GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                        a++++ r+HiiDf+i +G+QWp+++q L+sRp+gpp+lRiTg++ p++g    e++eetg+rLa++A++++vpfefn+ +a+++e++++e+L
  GSVIVT01016523001 344 AANKAARLHIIDFGIFYGFQWPSFIQRLSSRPGGPPKLRITGIDLPQPGfrPVERVEETGRRLANYARSFNVPFEFNA-IAQKWETIQIEDL 434
                        677889******************************************9*9***************************.7************ PP

               GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                        ++++gE ++Vn+ ++  +lldesv +es+r+ vL+l+++++P++++    +  ++ + F++rf eal ++sal+d+le+++pr+s+er
  GSVIVT01016523001 435 KINTGELVVVNCRYRFRSLLDESVVVESPRNIVLNLIRKMNPDIFIQGIVNGAYGVPFFMTRFREALFHFSALYDMLETNVPRQSSER 522
                        *************************************************************************************998 PP
3GRAS55.51.1e-17519591302374
               GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +er+er et+++W+ r e+aGF+++pl+++++k ak  ++ ++ + ++++e+ ++l++gWk+r ++++S+W+
  GSVIVT01016523001 519 SSERIERPETYKQWQVRNERAGFRQLPLDQEIVKIAKKRVKSCYHKDFMMDEDGQWLLQGWKGRIIYAISSWK 591
                        689*****************************************889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.992249594IPR005202Transcription factor GRAS
PfamPF035145.9E-55344522IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDEHLSGLYP SVNGIKFSEV YGSILSGENP SSGLGLQVPF LEQNNVFIPP FQPDPSGGNV  60
ASWSSVGVEE DPQEDCDFSD VVIRYVSQLL MEEDVEEKTR MFQESLALEA TEKSFYEVIG  120
KEYPASKDHH LSPSAEENHE NPTANYGVYS SSTTSYGKSV ETGSSNSPNT TIDGFGDRPM  180
SIFKSRGKKN SHLGHLDSEE ERSNKQSAVC DEVTVTSEMF DRVLLCDADK GEAALRESLQ  240
NEASKTVQQE GGLKGSNGGR SRGWKKGGKK DLVDLRTLLT LCAQAVAADD RRSANEQLKQ  300
IRQHACPMGD GVQRMAYYFA NGLEARLAGS GTQIYKGILT KPSAANKAAR LHIIDFGIFY  360
GFQWPSFIQR LSSRPGGPPK LRITGIDLPQ PGFRPVERVE ETGRRLANYA RSFNVPFEFN  420
AIAQKWETIQ IEDLKINTGE LVVVNCRYRF RSLLDESVVV ESPRNIVLNL IRKMNPDIFI  480
QGIVNGAYGV PFFMTRFREA LFHFSALYDM LETNVPRQSS ERIERPETYK QWQVRNERAG  540
FRQLPLDQEI VKIAKKRVKS CYHKDFMMDE DGQWLLQGWK GRIIYAISSW KPAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3228259226380Protein SCARECROW
5b3h_A8e-3328259225379Protein SCARECROW
5b3h_D8e-3328259225379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4723840.0AM472384.2 Vitis vinifera contig VV78X157260.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658551.10.0PREDICTED: scarecrow-like protein 30 isoform X2
SwissprotO809331e-163SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A438JX990.0A0A438JX99_VITVI; Scarecrow-like protein 9
STRINGVIT_13s0019g01700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-155SCARECROW-like 14