PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016522001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 1308aa    MW: 148659 Da    PI: 6.2941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016522001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.1e-14265325262
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk 62 
                         +lL+ cA+av +g+++ a+  L+ ++++asp gd mqR+a yf+++L+arl +s++e+yk
  GSVIVT01016522001 265 SNLLTLCAQAVVAGNQRSANDQLKLIRQHASPMGDGMQRMAYYFVNGLEARLRGSGTEIYK 325
                        6899******************************************************997 PP
2GRAS113.82.2e-35358489156288
               GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                        e+++etg+rLa++A++++vpfefn+ +a+++e++++e+L+++++++l+Vn++ +  +llde+v++es+rd+vL+l+++l+P v++    +  
  GSVIVT01016522001 358 ERVQETGRRLANYAKSFNVPFEFNA-IAQKWETIQVEDLKIDTEDVLVVNCHCRFRNLLDETVTVESPRDTVLNLIRKLNPVVFIQGIVNGG 448
                        789**********************.7***************************************************************** PP

               GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                        ++++ F +rf eal +ysalfd+le  +pre  er+  E++
  GSVIVT01016522001 449 YGAPFFRTRFREALFHYSALFDMLEHIVPRERLERTDREAR 489
                        ********************************999877765 PP
3GRAS215.23.4e-66101412342225
               GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91  
                         ++lL+ cA+av+++d + a++ L +++++as+ gd mqRla+yf++ L+arl++s+ ++yka+++++++    +++l++++l+  vsP++
  GSVIVT01016522001 1014 RSLLTLCAQAVAADDRTSANKQLRQIRQHASSMGDGMQRLAHYFANSLEARLSGSGAQMYKAITTKPSA----ANVLKIYHLLIVVSPFV 1099
                         689*************************************************************99997....8999************* PP

               GRAS   92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 
                         k++++  N+ I e +e++er+H+iDf+i +G+ Wp+L+q L+sRp+gpp+lRiTg++ pe+g   +e+leetg+rLa++A+ ++vpfefn
  GSVIVT01016522001 1100 KVTNFFSNKSIAEVAEKSERLHVIDFGILYGFSWPSLIQRLSSRPGGPPKLRITGIDLPEPGfrPAERLEETGRRLADYAKCFNVPFEFN 1189
                         *************************************************************9**************************** PP

               GRAS  180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225 
                         + +a+++e++++e+L+++++E+laV + ++  +l+de+v  es+rd
  GSVIVT01016522001 1190 A-LAQKFETVQIEDLKLDNDEVLAVRSRYRFGNLPDETVVAESPRD 1234
                         *.6************************************9999887 PP
4GRAS437.1e-1412261304296374
               GRAS  296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                          vva + +++++r et+++W+ r e+ GF+++pl+ +++++ak  ++ +  + + ++e+ ++l lgWk+r   ++S+W+
  GSVIVT01016522001 1226 TVVAESPRDSNARPETYKQWQVRNERIGFRQLPLDREVVEEAKEWVKSCLHKDFIIDEDGQWLRLGWKGRITHAMSSWK 1304
                         58999999******************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.5E-11265325IPR005202Transcription factor GRAS
PROSITE profilePS5098513.05335571IPR005202Transcription factor GRAS
PfamPF035147.6E-33358489IPR005202Transcription factor GRAS
PROSITE profilePS5098543.5469871307IPR005202Transcription factor GRAS
PfamPF035141.2E-6310141234IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1308 aa     Download sequence    Send to blast
MIFQPFASSS KHPSLWHIGS EGWYRSISNS SKESQRLLIE TLSFFFPLGF QIISENLHED  60
CDFNDVALKY ISQILMEEDM EEKTCMLQES LALEATEKSF YNVIGENYPP SIDHHRASSI  120
DEIHEDQYEN NCSNGFVDEP KSILEIPNIF SGSESSSQFR RGAEEARKFL PNGNGLFDMG  180
FKVEKKHPNE HFAEGSRGKR NSHPEDLDAE EDRNTKLSAI FDELTVRSEM LDQVLLCDAC  240
QSKRSNLGKS RGRKKGGKKD VVDLSNLLTL CAQAVVAGNQ RSANDQLKLI RQHASPMGDG  300
MQRMAYYFVN GLEARLRGSG TEIYKGKLLN FFSNTTIRKL AEKAESLHII DFGILYAERV  360
QETGRRLANY AKSFNVPFEF NAIAQKWETI QVEDLKIDTE DVLVVNCHCR FRNLLDETVT  420
VESPRDTVLN LIRKLNPVVF IQGIVNGGYG APFFRTRFRE ALFHYSALFD MLEHIVPRER  480
LERTDREARE LQAVSVSQHE SWVYAASSGR GDCQQSKGEA EVVLSQGLYT LRRRPVVATR  540
VEGKNAFCNL FLEACLIISI FNIPDEWRPT DLVYNCNWES ENRARIVNEN CWFTQQEHES  600
EKRKYQEGNN HSTDRGTKNH HLTREVSYTE TSSQKYAITL GCYNHHIATL PSSFSSSSSA  660
NMVPNIFNDS ESVLQFRRGF EEASKFLPNG NGLLLDLANH HTGLLSPEEM EAKHFYTCHC  720
ECGLRFPLLY DTIPKGSLPL FCFMVSGCDK GGRDVLLMPC LLGSQLIKYT FISTYEWLRS  780
LDSPCRMLME EDVEERNCMF QESLALEATE KLFYDIIREK YLPPDDHQTA PFIEENSGNS  840
DQNGSIDFST YSRNATSDGN CVELGRNFDV GEYKSPHVAP QPTCQSSFSS SSSAKRVPNI  900
FNDSPNNVVD KVKKKHADEY FRDGWRGKKK SHPWDLESKE ERSSKQAAFY NGITVTSEMF  960
DRVLLCGPEE DEDALRETWQ NETTKTLQQD GQSKGSGKSH GRTKGGKKDL VDFRSLLTLC  1020
AQAVAADDRT SANKQLRQIR QHASSMGDGM QRLAHYFANS LEARLSGSGA QMYKAITTKP  1080
SAANVLKIYH LLIVVSPFVK VTNFFSNKSI AEVAEKSERL HVIDFGILYG FSWPSLIQRL  1140
SSRPGGPPKL RITGIDLPEP GFRPAERLEE TGRRLADYAK CFNVPFEFNA LAQKFETVQI  1200
EDLKLDNDEV LAVRSRYRFG NLPDETVVAE SPRDSNARPE TYKQWQVRNE RIGFRQLPLD  1260
REVVEEAKEW VKSCLHKDFI IDEDGQWLRL GWKGRITHAM SSWKPAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-351020121326217Protein SCARECROW
5b3h_A9e-351020121325216Protein SCARECROW
5b3h_D9e-351020121325216Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1927931KKKSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4717780.0AM471778.2 Vitis vinifera contig VV78X184750.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658552.10.0PREDICTED: scarecrow-like protein 30 isoform X1
TrEMBLF6HNW50.0F6HNW5_VITVI; Uncharacterized protein
STRINGVIT_13s0019g01780.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-100GRAS family protein