PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016521001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 534aa    MW: 60105.3 Da    PI: 6.6985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016521001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.25.8e-17291358168
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppse 68 
                        l++lL  cA+av+++d+  a + L++++++asp gd mqRla+yf++AL+arl +s+s+++ka+ +++
  GSVIVT01016521001 291 LRSLLALCAQAVADDDQVSAGKQLQQIRQHASPMGDGMQRLAHYFANALEARLDGSGSQICKAVITKP 358
                        6789**********************************************************997766 PP
2GRAS54.91.8e-17364410106152
               GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                        ++++er+HiiDf++ +G+ Wp+Llq L++Rp+gpp+lRiTg++ pe+
  GSVIVT01016521001 364 LKKAERLHIIDFGVLYGFSWPSLLQRLSTRPGGPPKLRITGIDFPEP 410
                        67889*************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.728265533IPR005202Transcription factor GRAS
PfamPF035142.0E-14291358IPR005202Transcription factor GRAS
PfamPF035146.1E-15364410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MPIANSDYLL VSCMIEDFYM IKKMLNFIFS HHWVKCLSFS ESEKHQRPIN EDPLADSDFS  60
DIALKYLSQI LMEEDLEEKT GMFKESLALE ATEKLFHDII GEIYPPPGEE NCGNPSENDS  120
IDFSTYGFVD VPMSTLKVPN IFNDRESVLQ FRRGFEEASK FLPNRSDLSV DSANHNTELL  180
VPNNVMNKVE KKHGGEHFTD GSRGKKKTHR DLECEEVKSN KQSAVYNEMT LTSEMFDRVL  240
LCDADAYEAA LRESFQNETS KTLQQDGQSK GSNAGKPRGW KKGGKKDLVD LRSLLALCAQ  300
AVADDDQVSA GKQLQQIRQH ASPMGDGMQR LAHYFANALE ARLDGSGSQI CKAVITKPSG  360
AHFLKKAERL HIIDFGVLYG FSWPSLLQRL STRPGGPPKL RITGIDFPEP GFRPAQRGPE  420
RIERPETYKQ WQIRNERAGF RQLPLDQEIV NIAKEREIKN RTKSVDSGHL GGQDFLLLRL  480
ILNCQNLLFL LCVCRWSSII YNSSPPVSDL IARTTCRLSR FQGSGIVVVT FGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208KKKTH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4717780.0AM471778.2 Vitis vinifera contig VV78X184750.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278333.10.0PREDICTED: scarecrow-like protein 14
TrEMBLF6HNW40.0F6HNW4_VITVI; Uncharacterized protein
STRINGVIT_13s0019g01790.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.19e-64GRAS family protein