PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016520001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 440aa    MW: 49389.3 Da    PI: 8.5752
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016520001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.65.2e-18117196284
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                        ++lL+ cA+av+++d + a++ L++++++asp+gd  qR+a+yf+++L+ar+a+s++++yka+ +++ts    + +l+a++l+
  GSVIVT01016520001 117 TTLLTLCAQAVAADDWRTANEQLKQIRQHASPTGDGRQRMAHYFANGLEARMAGSGTRIYKAVITKPTS---AAIVLKAYHLL 196
                        6799***********************************************************999998...55566666655 PP
2GRAS58.51.4e-18199240111152
               GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                         +Hi+Df+i +G+QWp+L+q LasRp+gpp+lRiTg++ p++
  GSVIVT01016520001 199 VLHIVDFGILYGFQWPSLIQRLASRPGGPPKLRITGIDLPQP 240
                        57***********************************99876 PP
3GRAS1687.8e-52245436183374
               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+r+e++++e+L+++++E l+Vn+  +  +llde+v +es+r+ vL+l+++++P++++    +  ++++ Fl rf eal ++salfd lea+
  GSVIVT01016520001 245 AERWETIQVEDLKIDSDELLVVNCNCRFRNLLDETVVVESPRNIVLNLIRKMNPDIFIQGIVNGGYGAPFFLSRFREALFHFSALFDILEAT 336
                        689***************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +pr++ er+ +Ere++g++++nv+aceg+er+er et+++W+ r  +aGF+++pl++++ + ak  ++  + + + v+++ ++l++gWk+r 
  GSVIVT01016520001 337 VPRQTLERTLIEREIFGWDAMNVIACEGSERIERPETYRQWQIRNLRAGFRQLPLDQEIFNIAKEKVKLWYHKDFAVDQDGQWLLQGWKGRI 428
                        ***********************************************************************888****************** PP

               GRAS 367 LvsvSaWr 374
                        ++++S+W+
  GSVIVT01016520001 429 IFAISSWK 436
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.51490416IPR005202Transcription factor GRAS
PfamPF035141.8E-15117196IPR005202Transcription factor GRAS
PfamPF035145.0E-16199240IPR005202Transcription factor GRAS
PfamPF035142.7E-49245436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MFQASSALQT TEKSFYDVIG ENYSSITSST SDGNLVEHVW NGDLGESASL FRKGVEEASK  60
FLPNSTGLFV DLVTENSRGL VKQDPKDVVQ DGQSKGSNTG KSRGRKKGGG KDLVDLTTLL  120
TLCAQAVAAD DWRTANEQLK QIRQHASPTG DGRQRMAHYF ANGLEARMAG SGTRIYKAVI  180
TKPTSAAIVL KAYHLLLAVL HIVDFGILYG FQWPSLIQRL ASRPGGPPKL RITGIDLPQP  240
GFRPAERWET IQVEDLKIDS DELLVVNCNC RFRNLLDETV VVESPRNIVL NLIRKMNPDI  300
FIQGIVNGGY GAPFFLSRFR EALFHFSALF DILEATVPRQ TLERTLIERE IFGWDAMNVI  360
ACEGSERIER PETYRQWQIR NLRAGFRQLP LDQEIFNIAK EKVKLWYHKD FAVDQDGQWL  420
LQGWKGRIIF AISSWKAVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2912343526378Protein SCARECROW
5b3h_A2e-2912343525377Protein SCARECROW
5b3h_D2e-2912343525377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4717780.0AM471778.2 Vitis vinifera contig VV78X184750.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278317.30.0PREDICTED: scarecrow-like protein 14
RefseqXP_010658550.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-141SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA5BUL50.0A5BUL5_VITVI; Uncharacterized protein
STRINGVIT_13s0019g01810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-139GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]