PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016500001
Common NameLOC100241046, VIT_13s0019g02060
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 220aa    MW: 24295.1 Da    PI: 4.9604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016500001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.9e-3971071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrr+C++dCv+ap+f+ +q +++fa+vhk+FGasnv+kll +lp ++r +a+ ++ yeA ar+rdPvyG+v++i++lqqq+++l+
  GSVIVT01016500001   7 SCGACKFLRRRCTSDCVFAPHFCYDQaASHFAAVHKVFGASNVSKLLLHLPLHNRGEAAITISYEALARMRDPVYGCVAHIFALQQQVANLQ 98 
                        6************************978**************************************************************** PP

             DUF260  92 aelallkee 100
                        +e++ l+++
  GSVIVT01016500001  99 EEIEILGNH 107
                        ***998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0266108IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTGIGASCGA CKFLRRRCTS DCVFAPHFCY DQAASHFAAV HKVFGASNVS KLLLHLPLHN  60
RGEAAITISY EALARMRDPV YGCVAHIFAL QQQVANLQEE IEILGNHMAT FAPDTVTGEH  120
YGATNNLNTG LQFSSQTDTL NMQDYLNQQA LLLSHAGNAT ANQAFDSLMN EQPPPLYGWE  180
NQNFFCDSDA TPLERLFEGI DQEFSAYYPW SDNTTYPKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3431127115LOB family transfactor Ramosa2.1
5ly0_B7e-3431127115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4732970.0AM473297.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X024334.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277994.11e-166PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS83e-58LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7TLQ31e-164D7TLQ3_VITVI; Uncharacterized protein
STRINGVIT_13s0019g02060.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-60LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]