PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016458001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 936aa    MW: 105004 Da    PI: 9.5442
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016458001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-097738101954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+  e++ LA++++L+ +qV++WF N R +
  GSVIVT01016458001 773 FEHflHPYPTDLEKQILAQRTSLSRNQVSNWFINARVR 810
                        664459******************************88 PP
2BELL87.61.4e-28642710472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+  k ++L  +l+eV++rYk y++q++ v++sFe+vagl +a+pY+s+A ka+S hFr Lk+ai +qi
  GSVIVT01016458001 642 EHFWKSSRLAPMLDEVYRRYKLYCQQMHSVVASFETVAGLQNAAPYISFAFKAMSNHFRYLKNAILDQI 710
                        5667999************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1034731.05E-1139252IPR020846Major facilitator superfamily domain
CDDcd061743.98E-555241IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.203.9E-467241No hitNo description
PfamPF008541.4E-74108451IPR000109Proton-dependent oligopeptide transporter family
SuperFamilySSF1034731.05E-11319430IPR020846Major facilitator superfamily domain
SMARTSM005741.2E-34586708IPR006563POX domain
PfamPF075263.3E-31591706IPR006563POX domain
SMARTSM003893.3E-10754818IPR001356Homeobox domain
CDDcd000861.69E-11754815No hitNo description
PROSITE profilePS5007111.58755814IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-26757818IPR009057Homeodomain-like
SuperFamilySSF466892.95E-16757819IPR009057Homeodomain-like
PfamPF059201.8E-16771810IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MERRERGHGE EGEGGDEKWV HDSSVDYKGR VPPRASTGVW KAASFIITIE LSERLSYFGL  60
ATDLFNYFSK VLNQDSKTAA KNVNYWIGVT TVMPLLGGFL ADAYTGQFYT VLLSSIIYVM  120
GLSLLTMSQF IPRLKPCSNR KHCGHPRKVH EVVFFLGMYC VSLGTGGHKP CLESFGADQF  180
DDNHPVERKK KMSYFNWWNF ALCCGLLAGV TVIVYVDEYV GWGASYLILT SCMAFTILTF  240
YAGKRFYRYR LPEGSPLTPM LQVLVAAIAK RNLPYPSNPD LLYEVPKSHK SKGRLLCHTN  300
KLRFLDKAAI IEDKESLQSV EKKQSPWRLA TVTKVEEMKL VLNMIPIWFT TLTFGLCVAQ  360
ATTFFIKQSD TMNLEIIKDV SIPSASIYSI SAVGMIISVT IYEKILVPLL RRATGTERGI  420
KILQRIGFGM IFSVLSMSTA ALVERKRLRQ SKRENPRLFL QNNHPQLFST FQHAPVHQLH  480
CPDQNPNPAG FVNSEGVHVV GPSSASFSFP SCGDHSLSSI HNAKDLDHRF SFGADAVSLS  540
LAPHHRHQRC APLELNAKRY DVVSVRGGTP KPNNELRSSV PLGPFTGYAS ILKRSSFLSP  600
AQQLLDDFCG VGRGVSDSAS FDPPLEGSGT AEDPIGCSHG SEHFWKSSRL APMLDEVYRR  660
YKLYCQQMHS VVASFETVAG LQNAAPYISF AFKAMSNHFR YLKNAILDQI QFTGKALVGH  720
NIGKDETPRV WTADQGFHSQ KAVQSSMFLQ HPIWRSQRGL PDHAVAVLRA WLFEHFLHPY  780
PTDLEKQILA QRTSLSRNQV SNWFINARVR LWKPMVEEIL TLETKQAQMA AEGEANKPTD  840
PLPSANPLPL RKPFQNTPTQ KMEDTQSKRS RNKLSYMFEQ RDEQTNFPYN NFSSNYQMGV  900
SGIEKSASKG ISLALGLHQN NRIESSTSFF QPGNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh3_A9e-802645617453Nitrate transporter 1.1
4oh3_B9e-802645617453Nitrate transporter 1.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4841900.0AM484190.1 Vitis vinifera contig VV78X052697.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658510.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLF6HNT10.0F6HNT1_VITVI; Uncharacterized protein
STRINGVIT_13s0019g02450.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-73TALE family protein