PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016393001
Common NameLOC100240975, VIT_13s0019g03200
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 379aa    MW: 41188.4 Da    PI: 6.5957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016393001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.6e-184186147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg+W++eEd +l ++v ++G+++W++Iar +  gR++k+c++rw + 
  GSVIVT01016393001 41 RGPWSPEEDAILSQLVSKFGPRNWSLIARGIS-GRSGKSCRLRWCNQ 86
                       89******************************.***********985 PP
2Myb_DNA-binding58.31.8e-1893137147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++T+eEd +++ a+  +G++ W++Iar ++ gRt++ +k++w++ 
  GSVIVT01016393001  93 RKPFTEEEDRIIIAAHSHHGNK-WASIARLLP-GRTDNAIKNHWNST 137
                        789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.7793687IPR017930Myb domain
SuperFamilySSF466892.3E-3138134IPR009057Homeodomain-like
SMARTSM007172.5E-154089IPR001005SANT/Myb domain
PfamPF002496.5E-174186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-264294IPR009057Homeodomain-like
CDDcd001671.49E-144385No hitNo description
PROSITE profilePS5129427.84188142IPR017930Myb domain
SMARTSM007171.2E-1792140IPR001005SANT/Myb domain
PfamPF002495.1E-1693137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2495141IPR009057Homeodomain-like
CDDcd001672.24E-1395138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDQLQVDSAA AALVDEEDVV TANDARRDGD TRAGGSSSRV RGPWSPEEDA ILSQLVSKFG  60
PRNWSLIARG ISGRSGKSCR LRWCNQLDPC VKRKPFTEEE DRIIIAAHSH HGNKWASIAR  120
LLPGRTDNAI KNHWNSTLKR QCKKLDMFKP ISGSMLEDGS PDRTKASSEE TMSPGDIDSR  180
KPPEGRDASL MDDGPYQCEN KVQTTEDHSS ISRPMARVSA FSVYNPPSGL RVGSAFSRAA  240
PMKGPLVQTS KPHLEVCKFL EGVYSEPTIP LQCGHGCCEA PTGGQSQGSL LGPEFIEYME  300
PPPFSSHELA SIAAELNSIA WIKSGLVNSS SSMQDETAGQ RLCMGAAAQL KNEHLRLEEG  360
RNKLMGMMPE VLPTQMPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-41401413104C-Myb DNA-Binding Domain
1msf_C4e-41401413104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302730.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4517120.0AM451712.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X221882.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276341.10.0PREDICTED: transcription factor RAX1
TrEMBLD7TMI60.0D7TMI6_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-102myb domain protein 109