PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016370001
Common NameLOC100255200, VIT_13s0019g03370
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 232aa    MW: 26053.5 Da    PI: 10.3125
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016370001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-1372116347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  GSVIVT01016370001  72 PWTEDEHRRFLMGLIKHGKGDWRNISRNFVVSKTPTQVASHAQKY 116
                        8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.173122IPR017884SANT domain
PROSITE profilePS5129419.05765121IPR017930Myb domain
SuperFamilySSF466892.69E-1566120IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1768120IPR006447Myb domain, plants
SMARTSM007177.9E-1169119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1069119IPR009057Homeodomain-like
CDDcd001671.84E-972117No hitNo description
PfamPF002491.4E-1072116IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MIPGKTVWDV IQQYKILEED VNDIEAGMFP IRGYLAPSFT LELVENRGLD ALRKRTATMV  60
RASDQERKKG VPWTEDEHRR FLMGLIKHGK GDWRNISRNF VVSKTPTQVA SHAQKYFARQ  120
LSGGKDKRRP SIHDITTVNL TDTTPPENNK SPSLHHSTAL QSQQKSTGAP KVILDWDHSN  180
DGALMVFNST HGNLFMPSPY EVASFGTHHG AHIVPRNPVF QIQSARHQVR G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.56670.0bud| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4371040.0AM437104.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X270786.13, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275014.11e-173PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLF6HNL81e-172F6HNL8_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03370.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]