PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016334001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 21159.1 Da PI: 6.51 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.5e-39 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C+++ +lapyfp +++ kf ++hk+FGasn++k l++lpe+ r da+ss+vyeA+ar+rdPvyG++g i++lq++l+ l++ GSVIVT01016334001 57 PCAACKILRRRCTDKGMLAPYFPPTETLKFIIAHKVFGASNIVKSLQELPESMRADAVSSMVYEAKARIRDPVYGCAGAINQLQKELRDLQT 148 7******************************************************************************************* PP DUF260 93 elallkee 100 ela++++ GSVIVT01016334001 149 ELAATQAD 156 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24 | 56 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-38 | 57 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MIFIHYTFMG RNGRDNGKRE SEIDEMEYTD PTTTGSTIDP SSSSRLAASL PTAVKGPCAA 60 CKILRRRCTD KGMLAPYFPP TETLKFIIAH KVFGASNIVK SLQELPESMR ADAVSSMVYE 120 AKARIRDPVY GCAGAINQLQ KELRDLQTEL AATQADLAII RCQQQQLQLN DSMSFPEQSN 180 LGSPWESYWN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 57 | 164 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 57 | 164 | 11 | 118 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM463055 | 1e-140 | AM463055.1 Vitis vinifera contig VV78X178974.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275345.1 | 1e-121 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 5e-52 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | F6HNJ8 | 1e-119 | F6HNJ8_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g03710.t01 | 1e-120 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-54 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016334001 |