PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015578001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 348aa    MW: 40032.4 Da    PI: 10.1006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015578001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-15139186148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g W +eEd+ll+++v+ +G g W++++++ g+ R++k+c++rw +yl
  GSVIVT01015578001 139 KGLWKPEEDLLLKKYVEAHGEGKWDAVSERTGLMRSGKSCRLRWKNYL 186
                        678*******************************************97 PP
2Myb_DNA-binding48.42.2e-15194237348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +++E++++++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01015578001 194 GISKDEEDIIIRMHKLLGNR-WSLIAGRLP-GRTDNDVKNYWNTHL 237
                        5689****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.342134190IPR017930Myb domain
SuperFamilySSF466897.65E-28135233IPR009057Homeodomain-like
SMARTSM007171.3E-13138188IPR001005SANT/Myb domain
PfamPF002495.2E-15139186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-21140193IPR009057Homeodomain-like
CDDcd001671.13E-10142186No hitNo description
PROSITE profilePS5129419.383191241IPR017930Myb domain
SMARTSM007172.4E-15191239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-22194239IPR009057Homeodomain-like
PfamPF002491.3E-13195237IPR001005SANT/Myb domain
CDDcd001675.58E-11196237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNMRISYIHL SLFNCLSLRP HQSIYFWNKN ENVYKNETII THFKWNIEYA LGGVNVSRKA  60
KVEQKGALTS IEGRNPCTME SATQYGRPPL FLHNYSHSFA LSSHTNLSVS VRETVRKERD  120
FVFVMEETGG LVPKPRVKKG LWKPEEDLLL KKYVEAHGEG KWDAVSERTG LMRSGKSCRL  180
RWKNYLRPNK KRGGISKDEE DIIIRMHKLL GNRWSLIAGR LPGRTDNDVK NYWNTHLNKG  240
RSGGKRKSPS SDDNAGHKRR RGLLNSQPVL DGSPEKRSEG SDGRKQEEFH NIPDNNPRME  300
DTKSFNHDIK SPSLPSVKDT TFLFYDEPFI SFSDAFVLFE TMGEIEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2113223920126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244260KRKSPSSDDNAGHKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4730150.0AM473015.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X090374.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282349.21e-163PREDICTED: transcription factor MYB82
SwissprotQ9LTF72e-61MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A438JQF31e-162A0A438JQF3_VITVI; Transcription factor MYB82
TrEMBLF6HHA71e-162F6HHA7_VITVI; Uncharacterized protein
STRINGVIT_11s0016g05690.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-60myb domain protein 82