PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015575001
Common NameLOC100244125, VIT_11s0016g05660
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 224aa    MW: 25436.7 Da    PI: 9.0503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015575001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W +eEd+ll+++v+ +G g W+t++++ g++R +k+c++rw +yl
  GSVIVT01015575001 15 KGLWKPEEDLLLKKYVEAHGEGKWATVSERSGLKRGGKSCRLRWKNYL 62
                       678*****************************99************97 PP
2Myb_DNA-binding52.41.2e-1668113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg  ++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01015575001  68 RGEISKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 113
                        78889*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.751066IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-221065IPR009057Homeodomain-like
SuperFamilySSF466892.66E-2812109IPR009057Homeodomain-like
SMARTSM007171.1E-131464IPR001005SANT/Myb domain
PfamPF002492.9E-141562IPR001005SANT/Myb domain
CDDcd001671.20E-91862No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2466115IPR009057Homeodomain-like
SMARTSM007177.2E-1767115IPR001005SANT/Myb domain
PROSITE profilePS5129420.51767117IPR017930Myb domain
PfamPF002495.7E-1568113IPR001005SANT/Myb domain
CDDcd001675.51E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEETGGLVPK PSVKKGLWKP EEDLLLKKYV EAHGEGKWAT VSERSGLKRG GKSCRLRWKN  60
YLRPNIKRGE ISKEEEDLII RMHKLLGNRW SLIAGRLPGR TDNEVKNYWN THLNKGRSRG  120
KRKSPSSDDD AGNKRHRGLP NSQPVCDGSP EKSSEGSEGR KEEESHNILD NNPRMEDTKS  180
LNHDIKSPLP PSVEDTAFLF YAEPFISFPD PFVLFETLGE MEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-23811520126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4762110.0AM476211.2 Vitis vinifera contig VV78X035166.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282342.11e-162PREDICTED: transcription factor MYB82
SwissprotQ9LTF78e-66MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A438JQC51e-161A0A438JQC5_VITVI; Transcription factor MYB82
TrEMBLD7TC471e-161D7TC47_VITVI; Uncharacterized protein
STRINGVIT_11s0016g05660.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-63myb domain protein 82