PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015370001
Common NameLOC100255911, VIT_11s0016g03750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 932aa    MW: 101937 Da    PI: 5.8385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015370001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-184591148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEdell +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  GSVIVT01015370001 45 KGQWTAEEDELLCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 91
                       799****************************9.************986 PP
2Myb_DNA-binding62.96.3e-2097143148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEde+++++v+++G++ W+tIa+ ++ gR +kqc++rw+++l
  GSVIVT01015370001  97 KGPWSKEEDEIIIELVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 143
                        79******************************.*************97 PP
3Myb_DNA-binding48.32.4e-15149191145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  GSVIVT01015370001 149 KEAWTQEEELALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 191
                        579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4524091IPR017930Myb domain
SuperFamilySSF466891.45E-1843105IPR009057Homeodomain-like
SMARTSM007174.5E-154493IPR001005SANT/Myb domain
PfamPF002498.3E-164591IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-224699IPR009057Homeodomain-like
CDDcd001679.13E-144891No hitNo description
PROSITE profilePS5129432.33992147IPR017930Myb domain
SuperFamilySSF466896.47E-3294190IPR009057Homeodomain-like
SMARTSM007173.0E-1996145IPR001005SANT/Myb domain
PfamPF002492.4E-1897143IPR001005SANT/Myb domain
CDDcd001671.46E-1699143No hitNo description
Gene3DG3DSA:1.10.10.605.3E-28100147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-21148198IPR009057Homeodomain-like
PROSITE profilePS5129419.577148198IPR017930Myb domain
SMARTSM007171.2E-14148196IPR001005SANT/Myb domain
PfamPF002492.3E-13149192IPR001005SANT/Myb domain
CDDcd001671.92E-11151191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MASMMTAGVK RAEVLVSTSE ANGDSFQKMR ALHGRTTGPT RRSTKGQWTA EEDELLCKAV  60
QRFKGKNWKK IAECFKDRTD VQCLHRWQKV LNPELIKGPW SKEEDEIIIE LVNKYGPKKW  120
STIAQALPGR IGKQCRERWH NHLNPAINKE AWTQEEELAL IHAHQIYGNK WAELTKFLPG  180
RTDNAIKNHW NSSVKKKLES YLASGLLAQF QSFSHELPGA SLLDVSRESP GLSGTPQYCI  240
SLNGSHDTGP TLLQSSVGFK SSTSTENILI DSDKLEHLLI SENDYSEITL SEAVIHGNFR  300
CVNAENLSNN IDSDGGTSSL HCQSDLQSSA TTGSLALESY ITQGSVLGQT LELEIFTSSC  360
NDFIDIDSPD GETDKAGDHL KLDKAKNAPK LVPVDIFSLA NAESMGTLPS MDDNKSQHLK  420
SDGKKDASGL APVDLLSSEN SDSTQAQPSM DNNTTVLVEE KNSRALFYEP PRFPRLDIPF  480
VSCDLMASGS DMQQEYSPFG IRQLLIPSMN FSTPCSLQDS PCRGGTPDSI LKNAAKSFTS  540
TPSILKKRPR EVVSPSEQAR GEKNPERETN LLGLFCANDF PSLDVIFYEN GPCNPSLSST  600
ERNSLSPHYK KVNLDHVFEE GKEGIANSES RVSEKGKVKQ GTNVFGAKAK CEVDTTSQTH  660
SGVLVECNKN DQLISSHDRD EYQTSGAMGA GALSSGTKDS RKLDTASNQS GLLESSSGKQ  720
PLSSFLPSAV CAKKNERHVV PVTSSRCTQS SNLLEITFEN AGSDGDIQSF NIFGDTPGIK  780
RGIESPSAWK SPWFMNSFLP GPRIDTDVTT EDLEYFMSPG MRSYDAIGLM RQMNEHTAAA  840
FTNAREILAS DDPEMPSKTK LSSNQSSSPE TNDFPHNEQE NKVPGVLTER RVLDFSGCGT  900
PGKGTEKKKF SGFGATVSFS SPSSYLLKSC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-69451986159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-69451986159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.247190.0bud| flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4663840.0AM466384.2 Vitis vinifera contig VV78X097971.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280843.20.0PREDICTED: myb-related protein 3R-1 isoform X1
RefseqXP_010656311.10.0PREDICTED: myb-related protein 3R-1 isoform X1
RefseqXP_010656312.10.0PREDICTED: myb-related protein 3R-1 isoform X1
RefseqXP_010656313.10.0PREDICTED: myb-related protein 3R-1 isoform X1
RefseqXP_010656314.10.0PREDICTED: myb-related protein 3R-1 isoform X1
TrEMBLF6HH160.0F6HH16_VITVI; Uncharacterized protein
STRINGVIT_11s0016g03750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-108Homeodomain-like protein