PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015264001
Common NameLOC100243880, VIT_11s0016g02780
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 286aa    MW: 31156.5 Da    PI: 7.1777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015264001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd +l   v+ +G+g +W + +r+ g++R++k+c++rw++yl
  GSVIVT01015264001 14 RGPWSPEEDNILRAFVEAHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding42.71.3e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T++Ed ++v + +  G++ W+ Ia++++ +Rt++++k++w++
  GSVIVT01015264001  69 GGFTEDEDNIIVTLYNNIGSR-WSVIASHLP-RRTDNDVKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.08966IPR017930Myb domain
SuperFamilySSF466892.38E-2711109IPR009057Homeodomain-like
SMARTSM007172.9E-121364IPR001005SANT/Myb domain
PfamPF002491.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231569IPR009057Homeodomain-like
CDDcd001671.92E-91662No hitNo description
SMARTSM007171.6E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129415.98567117IPR017930Myb domain
PfamPF002492.9E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2370117IPR009057Homeodomain-like
CDDcd001675.65E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDNILRAFVE AHGTGGNWIA LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEDEDNIIV TLYNNIGSRW SVIASHLPRR TDNDVKNYWN TKLKKKLSGK  120
ADLKKGSNNN GNATSNSIIH LSSVQFPGSI PKVEDYDYGI SVGFGTDSSP VSYQTGMSYQ  180
QDFHSQGLVS NPAVQFPLPG PMEVSEFNTS GNTSYSISSS QEVSSLSAAS SSLALDNTTH  240
ASWSSYNGGR VQDDEFLFDF GSPYGLLSGF GFQEQAHEAG LVNQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3821880.0FQ382188.1 Vitis vinifera clone SS0ABG67YP13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280054.20.0PREDICTED: transcription factor MYB36
TrEMBLD7TBD20.0D7TBD2_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-65myb domain protein 84