PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015227001
Common NameLOC100264589, VIT_11s0016g02440
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HRT-like
Protein Properties Length: 561aa    MW: 62271 Da    PI: 9.9109
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015227001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like61.51.2e-19271300130
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                        +CGv+l+dG++C+r+Pv+gRKRC+eHKGm+
  GSVIVT01015227001 271 TCGVALGDGTICERPPVEGRKRCAEHKGMK 300
                        7****************************8 PP
2HRT-like63.62.7e-20353383131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        iCGvil+dG +CkrqPv gRKRCeeHKGmR+
  GSVIVT01015227001 353 ICGVILDDGFPCKRQPVLGRKRCEEHKGMRT 383
                        8*****************************5 PP
3HRT-like55.97.2e-18422452131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        +CGv l++G++Ckr +v gRKRCeeHKGmRi
  GSVIVT01015227001 422 TCGVDLGHGIFCKRLAVAGRKRCEEHKGMRI 452
                        7*****************************7 PP
4HRT-like62.36.9e-20487517131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        +CG++l+dGs+CkrqPv+g+KRC++HKGmR+
  GSVIVT01015227001 487 TCGMTLGDGSICKRQPVEGNKRCWQHKGMRV 517
                        7*****************************7 PP
5HRT-like55.87.8e-18531559230
           HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                        CGv+l++GsvC+r P++gRKRCe+HKGmR
  GSVIVT01015227001 531 CGVLLRNGSVCSRVPAHGRKRCEQHKGMR 559
                        ***************************** PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVTTEPPIVS RLKREDCKRT KHDSEFTKWK ILVGPSDWED HSSRKEGAER YRVHNLPLCC  60
HCPGVYELGI SVSPTGLGRE VGKLDPAHIV VVYLGQAEDI RARLQHYGRS GAHLAKVDST  120
GNPNNCKNMP LQRGSGLFEG IFSRGYSIVF RWAPIESKRD AERTESRLLK TFDYAWNKGS  180
NGARRPSDVL RKLEKTSSST PPFPSITRKF QMLGQKQVGI IIKASKPFLQ ENGLSTDQDI  240
NSLLARVFKF GRSQPRLVSD RVGVTGNYNS TCGVALGDGT ICERPPVEGR KRCAEHKGMK  300
TKSSFSKPIV ERKPQMVDLN RESEGHSAQS YGYTVNFQLV GGKCPVNKDF TIICGVILDD  360
GFPCKRQPVL GRKRCEEHKG MRTNVSISNS TVGKSHHTYE SKLQPQVLPD CRSFSNTDYG  420
ITCGVDLGHG IFCKRLAVAG RKRCEEHKGM RINSLISTLA GEDKSHALDM GSGFITYNNS  480
NYNHTSTCGM TLGDGSICKR QPVEGNKRCW QHKGMRVNCS SSWFGSETTL CGVLLRNGSV  540
CSRVPAHGRK RCEQHKGMRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4868250.0AM486825.2 Vitis vinifera contig VV78X144939.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656218.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLD7TB990.0D7TB99_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-101effector of transcription2