PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015204001
Common NameLOC100261004, VIT_11s0016g02210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 310aa    MW: 34198.6 Da    PI: 9.6104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015204001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19177210134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  GSVIVT01015204001 177 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 210
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-13170211No hitNo description
SMARTSM004014.2E-19171222IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.532171207IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15175210IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.95E-11176204No hitNo description
PfamPF003204.9E-17177210IPR000679Zinc finger, GATA-type
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTPNYLNSPP PPPFPLQLNE DQHHQLLFSP KPQPSSSSSS SLTCPIFFSP TKEQGGCHYR  60
DLHQAQPQQE AHDKFVFRGG SYDHPTLESE SDNGLKLTIW KTEDRNENHS ENGSVKWMSS  120
KMRVMQKMMI SDQTGAQKPS NTALNFGDHK QQSLPSETDY NSINSSNINS NNTIRVCADC  180
NTTKTPLWRS GPRGPKSLCN ACGIRQRKAR RAMAAAAATA NGTILPTNTA PTKTKAKHKD  240
KKSSNGHVSH YKKRCKLAAA PSCETKKLCF EDFTISLSKN SAFHRVFLQD EIKEAAILLM  300
ALSCGLVHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4645900.0AM464590.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X168410.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282173.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A438E8H70.0A0A438E8H7_VITVI; Putative GATA transcription factor 22
TrEMBLD7TB780.0D7TB78_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-20cytokinin-responsive gata factor 1