PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015095001
Common NameVIT_11s0016g01250
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRF
Protein Properties Length: 388aa    MW: 43998 Da    PI: 8.6455
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015095001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.4e-2478121144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRC +++++++k+CErH+hrgr+rsrk++e
  GSVIVT01015095001  78 DPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVE 121
                        79***************************************997 PP
2QLQ60.45.2e-21944237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       +FTa+Q+q+L++Q+l++Ky+a+++P+Pp+L++ i++
  GSVIVT01015095001  9 PFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKR 44
                       8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.9E-13844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.182944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-16942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.58178122IPR014977WRC domain
PfamPF088798.2E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMSGRNRFPF TATQWQELEH QALIFKYMAS GMPIPPDLIF SIKRSLDSPL PTSKLFPTHQ  60
SQHIGWNCFQ MGLGRKVDPE PGRCRRTDGK KWRCAKEAYP DSKYCERHMH RGRNRSRKPV  120
EVMTPSKTPP TVTTPTATMA ANPPPPISSI TVNSSNPTSY SLALETQNHH THRHPSCYNT  180
HLHLPFLYPH SSSSRPPGFG GGVELSPQHN TTHLLLDSGS YSQTDYRNRY VHGLKEEVDE  240
HAFFSEQPSG ATRSFSGSSM DDPWRLTPLK MNSSPLDHSK QRSCSVLQSD YSCLQLQSLS  300
DTSNQKQDQH FYVLGSNLKY EKHEREEPEK TVHRFFDEWP PKSRDPWPDS EDKSPRDALV  360
STTQLSISMP NSSFDFSISN SRPHNGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4430080.0AM443008.2 Vitis vinifera contig VV78X166267.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656126.20.0PREDICTED: growth-regulating factor 1 isoform X2
TrEMBLD7TCG20.0D7TCG2_VITVI; Uncharacterized protein
STRINGVIT_11s0016g01250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-57growth-regulating factor 5