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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
GSVIVT01014862001 |
| Common Name | LOC100261722, VIT_19s0015g01930 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
GRAS |
| Protein Properties |
Length: 414aa MW: 46533 Da PI: 6.4572 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01014862001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 423.2 | 2.2e-129 | 36 | 412 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsevsP 89
+++lL++cAe vs++d+++a++lL+ ls ++sp gd+++Rl++ f AL+ rl+r + ++ ++s+++++ se+++++ l +++++P
GSVIVT01014862001 36 MRQLLISCAELVSQSDFSAARRLLSILSSNSSPFGDSTERLVHQFSAALSLRLSRYATPATSSGAMSASANTAaaDSEAFHSTYLsLNQITP 127
589****************************************************5555555444444443332355555555557****** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
+++fs+ltaNqaIlea+eg++++Hi+Dfdi++G+QWp+L+qa+a+R ++pp++RiTg g+ + l++tg+rL kfA++lg++f+f
GSVIVT01014862001 128 FIRFSQLTANQAILEAIEGQRAIHILDFDIMHGVQWPPLMQAIAERCgnlHPPPMIRITGTGE----DLGILQRTGDRLLKFAQSLGLKFQF 215
**********************************************977788***********....9************************ PP
GRAS 179 nvlvak....rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
++l+ + ++ +++L++ p+E+laVn+vl lhrll+++ + +L+ +k ++Pkvv+++e+ea+hn++ Fl+rf+eal++y+a
GSVIVT01014862001 216 HPLLLRndptSVPLYLPSALQLLPDETLAVNCVLYLHRLLKDDSRDL---RLFLHKIKAMEPKVVTIAEREANHNHPLFLQRFVEALDHYTA 304
**9444212244555899**********************6665554...59**************************************** PP
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
+fdslea+lp++s+er vEr ++greiv++v++eg++rrerhe++e+W+ +l+++GF++vpls +a +qaklllr ++ s+gyr++ ++s
GSVIVT01014862001 305 VFDSLEATLPPTSRERLAVERIWFGREIVDIVSAEGDNRRERHERFESWEVMLRSSGFSNVPLSPFALSQAKLLLRLHYpSEGYRLQIINDS 396
******************************************************************************************** PP
GRAS 358 lvlgWkdrpLvsvSaW 373
++lgW++++L+svS+W
GSVIVT01014862001 397 FFLGWQNQALFSVSSW 412
**************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010014 | Biological Process | meristem initiation |
| GO:0010223 | Biological Process | secondary shoot formation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MLGSFSSSHE EEEDPSDLQY QIPQPSRAFS PPAIQMRQLL ISCAELVSQS DFSAARRLLS 60
ILSSNSSPFG DSTERLVHQF SAALSLRLSR YATPATSSGA MSASANTAAA DSEAFHSTYL 120
SLNQITPFIR FSQLTANQAI LEAIEGQRAI HILDFDIMHG VQWPPLMQAI AERCGNLHPP 180
PMIRITGTGE DLGILQRTGD RLLKFAQSLG LKFQFHPLLL RNDPTSVPLY LPSALQLLPD 240
ETLAVNCVLY LHRLLKDDSR DLRLFLHKIK AMEPKVVTIA EREANHNHPL FLQRFVEALD 300
HYTAVFDSLE ATLPPTSRER LAVERIWFGR EIVDIVSAEG DNRRERHERF ESWEVMLRSS 360
GFSNVPLSPF ALSQAKLLLR LHYPSEGYRL QIINDSFFLG WQNQALFSVS SWH*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM431221 | 0.0 | AM431221.2 Vitis vinifera contig VV78X181692.22, whole genome shotgun sequence. |
