PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014854001
Common NameLOC100261730, VIT_19s0015g01870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 623aa    MW: 67555.7 Da    PI: 6.0905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014854001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32265322260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  GSVIVT01014854001 265 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHSK 322
                        8****************************************.***************85 PP

2WRKY103.11.6e-32439497159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  GSVIVT01014854001 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 497
                        59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-29257323IPR003657WRKY domain
SuperFamilySSF1182908.11E-26261323IPR003657WRKY domain
SMARTSM007743.4E-36264322IPR003657WRKY domain
PROSITE profilePS5081122.538265323IPR003657WRKY domain
PfamPF031067.0E-25265320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-37424499IPR003657WRKY domain
SuperFamilySSF1182901.57E-28431499IPR003657WRKY domain
PROSITE profilePS5081138.32434499IPR003657WRKY domain
SMARTSM007741.9E-37439498IPR003657WRKY domain
PfamPF031066.1E-25440497IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAGIDDHVAI IGDWVPPSPS PRMFFSMMLG DDVDSRATSE PTNENRNEAG DLGDQLTEFG  60
AFSDQKLSSR GGLVERIAAR AGFNAPRLNT ESIRSADLSL NPDVRSPYLT IPPGLSPTTL  120
LESPVFLSTS HAQPSPTTGK FPFIPNVNNR SSMLIPAAPD RSKEDLFEDF NTSSFAFKPV  180
AESGSSFFNN GASKISAATI PQQSFPSIEV SVQSENSLPS QIMEPTKVHS QIGSAEHSPP  240
LDEQQDEDGD QRGGVDNMVG GAPAEDGYNW RKYGQKQVKG SEFPRSYYKC THPNCQVKKK  300
VERSHEGHIT EIIYKGAHNH SKPPPNRRSA IGSSNPLSDM QLDIPEQAGP HGGDGDPGQN  360
GAPFESSDAV DASSTFSNDE DDDDRVTHGS VSLGYDGEGD ESESKRRKVE AYATEMSGAT  420
RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTNAGC TVRKHVERAS  480
HDLKSVITTY EGKHNHDVPA ARNSSHVNSV HNMARFDRPP SFGTFNLPGR QQLGPSHGFS  540
FGMNQPGLAN LGMAGLGPTQ GKLPALPVHP YLGQQRQVNE MGFMLPKGEP KVEPMSEPSL  600
NLSSGSAVYH QIMSRLPLGP QM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36265500878Probable WRKY transcription factor 4
2lex_A2e-36265500878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.304390.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695340.0AM469534.1 Vitis vinifera contig VV78X089168.35, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265612.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_010644699.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_010644700.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLF6I4X40.0F6I4X4_VITVI; Uncharacterized protein
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]