PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01014854001 | ||||||||
Common Name | LOC100261730, VIT_19s0015g01870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 623aa MW: 67555.7 Da PI: 6.0905 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.2e-32 | 265 | 322 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k GSVIVT01014854001 265 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHSK 322 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.1 | 1.6e-32 | 439 | 497 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ GSVIVT01014854001 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 497 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.3E-29 | 257 | 323 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-26 | 261 | 323 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-36 | 264 | 322 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.538 | 265 | 323 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-25 | 265 | 320 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-37 | 424 | 499 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 431 | 499 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.32 | 434 | 499 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 439 | 498 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-25 | 440 | 497 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MAGIDDHVAI IGDWVPPSPS PRMFFSMMLG DDVDSRATSE PTNENRNEAG DLGDQLTEFG 60 AFSDQKLSSR GGLVERIAAR AGFNAPRLNT ESIRSADLSL NPDVRSPYLT IPPGLSPTTL 120 LESPVFLSTS HAQPSPTTGK FPFIPNVNNR SSMLIPAAPD RSKEDLFEDF NTSSFAFKPV 180 AESGSSFFNN GASKISAATI PQQSFPSIEV SVQSENSLPS QIMEPTKVHS QIGSAEHSPP 240 LDEQQDEDGD QRGGVDNMVG GAPAEDGYNW RKYGQKQVKG SEFPRSYYKC THPNCQVKKK 300 VERSHEGHIT EIIYKGAHNH SKPPPNRRSA IGSSNPLSDM QLDIPEQAGP HGGDGDPGQN 360 GAPFESSDAV DASSTFSNDE DDDDRVTHGS VSLGYDGEGD ESESKRRKVE AYATEMSGAT 420 RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTNAGC TVRKHVERAS 480 HDLKSVITTY EGKHNHDVPA ARNSSHVNSV HNMARFDRPP SFGTFNLPGR QQLGPSHGFS 540 FGMNQPGLAN LGMAGLGPTQ GKLPALPVHP YLGQQRQVNE MGFMLPKGEP KVEPMSEPSL 600 NLSSGSAVYH QIMSRLPLGP QM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 265 | 500 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 265 | 500 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.30439 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469534 | 0.0 | AM469534.1 Vitis vinifera contig VV78X089168.35, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265612.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_010644699.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Refseq | XP_010644700.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X1 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | F6I4X4 | 0.0 | F6I4X4_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0015g01870.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01014854001 |
Entrez Gene | 100261730 |
Publications ? help Back to Top | |||
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