PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014770001
Common NameVIT_19s0015g01280
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 331aa    MW: 36382.9 Da    PI: 6.6663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.8e-191966148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  GSVIVT01014770001 19 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 66
                       89********************************************97 PP
2Myb_DNA-binding45.31.9e-1473115246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++  E++ +v+++   G++ W++Ia+ ++ gRt++++k++w++
  GSVIVT01014770001  73 GQFSDAEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 115
                        7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-251069IPR009057Homeodomain-like
PROSITE profilePS5129426.6171470IPR017930Myb domain
SuperFamilySSF466894.77E-2916113IPR009057Homeodomain-like
SMARTSM007176.0E-141868IPR001005SANT/Myb domain
PfamPF002493.2E-171966IPR001005SANT/Myb domain
CDDcd001671.16E-122266No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2470121IPR009057Homeodomain-like
SMARTSM007174.5E-1371119IPR001005SANT/Myb domain
PROSITE profilePS5129420.76271121IPR017930Myb domain
PfamPF002499.3E-1373115IPR001005SANT/Myb domain
CDDcd001674.74E-1075117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEPSMGRIP CCEKDNVKRG QWTPEEDNKL SSYIAQHGTR NWRLIPKNAG LQRCGKSCRL  60
RWTNYLRPDL KHGQFSDAEE QTIVKLHSVV GNRWSLIAAQ LPGRTDNDVK NHWNTKLKKK  120
LSGMGIDPVT HKPFSHLMAE IATTLAPPQV AHLAEAALGC FKDEMLHLLT KKRIDFQFQQ  180
SGAAPGNTAA TYTANKQDEK DDTIEKIKLG LSRAMQEPAM LPLNKPWDSN GATSANFAGA  240
CSGFPISVPG FQYGPSPFGN EGDGSPWSQS MCTGSTCTAG DQQGRLHEKL EDENGEETGG  300
GKEIRHSSSI FNSDCVLWDL PSDDLMDPMV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28191217108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.55000.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}.
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4862470.0AM486247.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X178746.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268897.10.0PREDICTED: transcription factor MYB80
SwissprotQ7XQN11e-126MYB80_ORYSJ; Transcription factor MYB80
TrEMBLD7UAP50.0D7UAP5_VITVI; Uncharacterized protein
STRINGVIT_19s0015g01280.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-119myb domain protein 103