PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014754001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 183aa    MW: 21035.2 Da    PI: 8.9145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014754001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-15104148347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++++  ++G+g+Wk+I+r +  +Rt+ q+ s+ qky
  GSVIVT01014754001 104 PWTEEEHVLFLEGLVKYGKGDWKSISRNFVITRTPSQVASHAQKY 148
                        8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.2423691IPR017884SANT domain
SuperFamilySSF466891.29E-113687IPR009057Homeodomain-like
SMARTSM007176.1E-73789IPR001005SANT/Myb domain
CDDcd001671.86E-64087No hitNo description
Gene3DG3DSA:1.10.10.601.7E-64088IPR009057Homeodomain-like
PROSITE profilePS5129420.71697153IPR017930Myb domain
SuperFamilySSF466892.51E-1699153IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17100152IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-11101148IPR009057Homeodomain-like
SMARTSM007176.4E-13101151IPR001005SANT/Myb domain
PfamPF002493.4E-13104148IPR001005SANT/Myb domain
CDDcd001679.04E-11104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MALCVYKYIS SLINFQIHLF NSEVLEMSQF IDYSLSFGSK WNRSEDILLE RAILIFPEET  60
PNRWYKIVTQ IPGKSPMDVL EHYIKLIQDI DAIDFGIEKK KGTPWTEEEH VLFLEGLVKY  120
GKGDWKSISR NFVITRTPSQ VASHAQKYFA RQRPGNMGKK RKRTSIHDIT TDDLPPLGGV  180
TP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163KKRKRT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4475001e-160AM447500.2 Vitis vinifera contig VV78X097283.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268137.21e-107PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H73e-44DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A438ERB51e-105A0A438ERB5_VITVI; Transcription factor DIVARICATA
TrEMBLA5B5N31e-105A5B5N3_VITVI; Uncharacterized protein
STRINGVIT_19s0015g01170.t013e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.19e-49MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]