PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01014690001 | ||||||||
Common Name | LOC100251442, VIT_19s0015g00590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 216aa MW: 23867.5 Da PI: 5.566 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144 | 3.4e-45 | 47 | 142 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 req++++P+a ++r+m++vlPa+a+is++ake++qecv efisf+tsea+d++++e rkti+g+d++ a+++lGf+dy+epl++yl++yr++ GSVIVT01014690001 47 REQEHYMPMAHLTRVMRRVLPAHAQISDQAKESIQECVCEFISFITSEANDRSHHELRKTITGEDIIAAMGKLGFDDYIEPLTLYLHRYRQA 138 89****************************************************************************************** PP NF-YB 94 egek 97 e+e+ GSVIVT01014690001 139 ENER 142 9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.6E-41 | 42 | 143 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.2E-32 | 49 | 145 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-19 | 53 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.9E-14 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 3.9E-14 | 99 | 117 | No hit | No description |
PRINTS | PR00615 | 3.9E-14 | 118 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0025073 | anatomy | branch | ||||
PO:0028002 | developmental stage | sporophyte development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
METDGDQFHV YRRKFPPNSS NSALTLGSRS SNPINTMAGE GQQQGRREQE HYMPMAHLTR 60 VMRRVLPAHA QISDQAKESI QECVCEFISF ITSEANDRSH HELRKTITGE DIIAAMGKLG 120 FDDYIEPLTL YLHRYRQAEN ERDGRLPLGG AMDYGSLGAT LSYGPPLPPP PPQTLNMGNQ 180 EGLQDAAAIV THNYFEEEAG GAGGSTSSRY PREDK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-44 | 41 | 137 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM483768 | 0.0 | AM483768.2 Vitis vinifera contig VV78X049591.24, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268482.1 | 1e-160 | PREDICTED: nuclear transcription factor Y subunit beta | ||||
Swissprot | Q84W66 | 9e-45 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | D7UAH9 | 1e-159 | D7UAH9_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0015g00590.t01 | 1e-160 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 7e-45 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01014690001 |
Entrez Gene | 100251442 |