PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014570001
Common NameLOC100267541, VIT_19s0014g04940
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 395aa    MW: 44056.4 Da    PI: 5.2694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014570001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.61.5e-77177393155373
               GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                        + + +++g+rLa + e++++p+ef++ v     d++ e+L+v+pgEalaVn+ lqlh+++desv+++++rde+L++vkslsPkv ++veqe+
  GSVIVT01014570001 177 QPSFSSIGKRLAAISEKFKIPVEFHP-VPVFAPDITQEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMVKSLSPKVTTLVEQES 267
                        667889********************.68889999********************************************************* PP

               GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                        ++n+++F++rf+e+l+yysa+f+s+++ lpre +eri+vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++
  GSVIVT01014570001 268 NTNTTPFFTRFIETLDYYSAMFESIDVALPRERKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIR 359
                        ******************************************************************************************** PP

               GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        +llr ++ + y++ e++g+++lgWkdr+Lvs+SaW
  GSVIVT01014570001 360 TLLRCYS-EHYTLVERDGAMLLGWKDRNLVSASAW 393
                        ***9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.5141375IPR005202Transcription factor GRAS
PfamPF035145.0E-75177393IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSRQIFGYS VTGADLSFTS SHPTVPSIPN RLFGSLKFDL GNSPNSPFSN LFDCDTLTTF  60
SDSQEQHSST ENLSELSASC SSVETNSYFN HLSPSVGCRR DSLQGYSSGT SLLQNASPCH  120
NIKHALLELE SALMAPDADE VTTPSPSLGE DRGPQIQVPT PRAWSQEAQG SLVLQPQPSF  180
SSIGKRLAAI SEKFKIPVEF HPVPVFAPDI TQEMLDVRPG EALAVNFPLQ LHHTPDESVD  240
VNNPRDELLR MVKSLSPKVT TLVEQESNTN TTPFFTRFIE TLDYYSAMFE SIDVALPRER  300
KERINVEQHC LARDIVNIIA CEGKERVERH ELFGKWKSRL TMAGFRQYPL STYVNSVIRT  360
LLRCYSEHYT LVERDGAMLL GWKDRNLVSA SAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-33179393171378Protein SCARECROW
5b3h_A4e-33179393170377Protein SCARECROW
5b3h_D4e-33179393170377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.15810.0bud| cell culture| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4622480.0AM462248.2 Vitis vinifera contig VV78X235829.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282942.11e-152PREDICTED: chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG11e-117CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLF6H2I71e-151F6H2I7_VITVI; Uncharacterized protein
STRINGVIT_19s0014g04940.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.19e-98SCARECROW-like 21
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]