PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01014454001 | ||||||||
Common Name | LOC100243528, VIT_19s0014g03820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 37848.6 Da PI: 7.2502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+d+++++G g+W+t ++ g++R++k+c++rw +yl GSVIVT01014454001 14 KGPWTVEEDQKLLDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w++ GSVIVT01014454001 67 RGRFSFEEEEAIIQLHGILGNK-WSAIAARLP-GRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.222 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.00E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.931 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.41E-12 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRTPCCDKN GMKKGPWTVE EDQKLLDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHGILGNKWS AIAARLPGRT DNEIKNYWNT RIRKKLLRMG 120 IDPVTHAPRM DLLELASLLG SSLYNSSLQL NVPAGSLGMG PMVNDDVLTL ATALLSSHFQ 180 NQFESFQGNN LQSSIQEVQA CPTSSAASTP FLNETQLMQA IAEHLSQNPT DFAYQNSLPN 240 LWQVHGGHPI TAASFTNPTL SFDSIPSSIT GHQTLKSNAV SNNTQNFSFD SVLSTPSSTS 300 TPLDSSQMTY AKGSTEDERD SYCSNFLMFD IPSDLDVNAI M* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-31 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-31 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-31 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM485540 | 0.0 | AM485540.2 Vitis vinifera contig VV78X111537.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281638.1 | 0.0 | PREDICTED: transcription factor MYB35 | ||||
Swissprot | Q9LDR8 | 1e-109 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | F6H2F3 | 0.0 | F6H2F3_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0014g03820.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21440.1 | 6e-96 | MYB-like 102 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01014454001 |
Entrez Gene | 100243528 |
Publications ? help Back to Top | |||
---|---|---|---|
|