PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01014403001

Common Name

LOC100243607, VIT_19s0014g03290

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 334aa MW: 37190.8 Da PI: 8.8885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01014403001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Ptdeel+v+yL++kv+g+ ++l e+i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + GSVIVT01014403001 14 LPPGFRFYPTDEELLVQYLCRKVAGQGFSL-EIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVI 104 79*************************9.99***********7777799********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl GSVIVT01014403001 105 TT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 99.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-67	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.431	14	162	IPR003441	NAC domain
Pfam	PF02365	1.7E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGQG FSLEIIGEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLL ENSRKNGSSK LDDWVLCRIY KKNSNSSKPI AAVLPSKAHS 180 NGSSSSSSSH LDDVLESLPE IDDRFFSPNR MNSLRVSQPD EKVNFHNLGS GNFDWATLAG 240 VSSLQELVSG VQSHAQPPAA VNNSNEMYVP SLPPLIQAEE EVQSGLRTQR VDPVMNQGFF 300 PQNSNAFSQS FSNSLDPFGF RYPTQPSGFG YRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-109	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-109	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.1428	0.0	flower\| fruit\| inflorescence\| leaf\| pedicel\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00012	PBM	Transfer from AT1G52890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM484265	0.0	AM484265.2 Vitis vinifera contig VV78X264547.53, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284668.1	0.0	PREDICTED: NAC domain-containing protein 72
Swissprot	A0A3Q7HH64	1e-151	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A438I8X3	0.0	A0A438I8X3_VITVI; NAC domain-containing protein 72
TrEMBL	E0CSQ1	0.0	E0CSQ1_VITVI; Uncharacterized protein
STRING	VIT_19s0014g03290.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-126	NAC family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01014403001
Entrez Gene	100243607

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]