PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014258001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HB-other
Protein Properties Length: 420aa    MW: 45925.7 Da    PI: 6.1931
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014258001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.63.7e-071374655
                       S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
           Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                       +ft++++ e+e+  ++  n+ p +e    L++k            ++ +qV +WFqNrR+  
  GSVIVT01014258001 13 RFTPNEVAEMENILQEhnNSMPAREILVALSEKFsastdragriVVQVKQVWNWFQNRRYAI 74
                       699***********96669999********************999**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-11476IPR009057Homeodomain-like
SMARTSM003893.8E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-81381IPR009057Homeodomain-like
PfamPF000461.2E-41374IPR001356Homeobox domain
PROSITE profilePS500719.4751377IPR001356Homeobox domain
CDDcd000861.46E-51375No hitNo description
PfamPF167198.2E-42142269IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTPNEVA EMENILQEHN NSMPAREILV ALSEKFSAST DRAGRIVVQV  60
KQVWNWFQNR RYAIRAKSTK APGKLSVSSL PKDDLTQVKN VPQDEAYFKC PLVLAIILQI  120
CTDLILVPVP NAGKSAPSDS SQMEFEAKSA RDGAWYDVAA FLSHRYLDTS DPDVLVRFAG  180
FGPEEDEWVN VKRNVRQRSL PCESSECVVV IPGDLILCFQ EGKEQALYYD AHVLDAQRRR  240
HDVRGCRCRF LVRYDHDQSE EIVPLRKVCR RPETDYRLQQ LHASNESGSV DQQKPEPSYG  300
GSISRIFPTP PEMMQKLHVA VDIAGAGSVV KPPSADTPMP AGTTAPEPKP LEISSTGNGG  360
NPGILSENAV VTGISSANAI AGNPDSKSSL PFSNFLGNQT EHHAPPDGSS EETAVAKLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-491402731134SHH1 SAWADEE
4iur_B4e-491402731134SHH1 SAWADEE
4iut_A4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-491402731134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.126500.0bud| fruit| pedicel
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4584130.0AM458413.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X140268.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644158.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_010644159.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-137SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLF6H1Z40.0F6H1Z4_VITVI; Uncharacterized protein
STRINGVIT_19s0014g01880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-126sequence-specific DNA binding transcription factors;sequence-specific DNA binding