PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014100001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-X1
Protein Properties Length: 663aa    MW: 70405.3 Da    PI: 8.663
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014100001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.87.3e-06106124119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+C+ lCH G CppC 
  GSVIVT01014100001 106 CGQHSCENLCHSGHCPPCL 124
                        ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060086.86E-558117No hitNo description
CDDcd060081.71E-1196148No hitNo description
SMARTSM004382.8E-4106125IPR000967Zinc finger, NF-X1-type
CDDcd060085.38E-5153201No hitNo description
SMARTSM0043848163178IPR000967Zinc finger, NF-X1-type
SMARTSM004389.8216245IPR000967Zinc finger, NF-X1-type
CDDcd060084.38E-5243292No hitNo description
SMARTSM004380.35254275IPR000967Zinc finger, NF-X1-type
PfamPF019404.9E-47428647IPR002794Protein of unknown function DUF92, TMEM19
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009706Cellular Componentchloroplast inner membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGMESLVGSH SIERLWVLVR VMRIFALMSV LQRHPGPCPP CKAFAPPQLC PSEEKFTCEK  60
PCGRKKNCGR HCCSERCCPL SNSGNVLSGD WDPHLCSMTC GKKLRCGQHS CENLCHSGHC  120
PPCLETIFID LTCACGRTSI APPLPCGTPT PSCQHPCSIP QPCGHLSSHN CHFGDCPPYS  180
ILIAKECIGG HVVLKNIPCG SMDIRCNKLC SKTKQCGMHA CRRTCHPSCD SSYASGSGLK  240
SSCGQTCGAS RRDCRHTCIA PCHPSSLCPD SRCDFPVTIT CSCGRISATV PCDAGGSSVG  300
RNAGMIIKKD ISLLQIYQKS GQNPSILHTT PCLLHTQTQY ASQTRRKMAL STTLFRFPPI  360
PLQQFHHTSS TKRLLYPRIS PQFPKMPLTA KALPNPVPGF RGAVSEAIAL IQSSPATWKS  420
ALLNNFLIFI AGAPILVSGL SLSGIAAAFL LGTLTWRAFG SPGFLLVATY FVIGTAATKV  480
KMAQKEAQGV AEKRKGRRGP GSVIGSSAAG CVCAFLSIYG VGGEAFLQLW QLGFVASFCT  540
KLSDTVSSEI GKAYGKTTYL VTTLKIVPRG TEGAVSAEGT SAGLLASILL AFVGCLMGQI  600
DAVEAVICVV AAQIANLGES FIGAALQGKE GFRWLNNDVV NVINISMGSI LAILIQKILR  660
GF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.179070.0cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3805840.0FQ380584.1 Vitis vinifera clone SS0ACG48YF13.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-118NF-X-like 1