PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014072001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family STAT
Protein Properties Length: 676aa    MW: 75998.7 Da    PI: 5.1704
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014072001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT202.14.6e-632223401119
               STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipkl 92 
                        ldv+ll+algqpv+k++ev asLlyad+g++vek++d+eapLL+sydG+efss+drp+kl +GrasfklkisqLsskcdnrLf+ikf+ipk+
  GSVIVT01014072001 222 LDVILLDALGQPVNKEIEVDASLLYADNGEPVEKPNDSEAPLLTSYDGIEFSSSDRPSKLSNGRASFKLKISQLSSKCDNRLFHIKFSIPKI 313
                        8******************************************************************************************* PP

               STAT  93 kkypfleavskpirCisrsrntrsssl 119
                         +ypfle++s++i+Cisr+rntr+s +
  GSVIVT01014072001 314 GTYPFLETISHSIHCISRNRNTRPSLK 340
                        ***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2007.9E-424166IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133852.8E-624171No hitNo description
SuperFamilySSF498992.38E-826170IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103387.08E-64542651No hitNo description
Gene3DG3DSA:3.30.505.101.9E-5550614IPR000980SH2 domain
SuperFamilySSF555506.1E-10550660IPR000980SH2 domain
PROSITE profilePS5000110.034553635IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAENVSEDAH DYSLLKDLRL QIGVEDSSFS LCFWVYLMNS TPFPATIIGQ VHSDITGSAP  60
FLVLNEKKKM MLLPLLYLHR EALYPGNSTS WTEVPSASAE VDFPLKRWVH VGCEVATDFM  120
RLHIDGKIVG EKLLSSLSNN ESDSNGSGRV TLVGIGGDDA VQGYIHNAKI LPLTFSIKDH  180
YVQDPPLQLS IDSSTALDIE EDSDGVWSIV GGKASCRRNF SLDVILLDAL GQPVNKEIEV  240
DASLLYADNG EPVEKPNDSE APLLTSYDGI EFSSSDRPSK LSNGRASFKL KISQLSSKCD  300
NRLFHIKFSI PKIGTYPFLE TISHSIHCIS RNRNTRPSLK RIKSGQEKSS ATFMVNNVCQ  360
THLEGRPENV EETENSSSHS ESTEEGNPFF NNMSSYKNQI SDLTIFKYCL GGNADRCLLL  420
KEIASFASEQ ELEDFAQMVA LYSGCSHHRC QIIITRKLIE EGTKAWNLIS QNNHQVHWEN  480
VVFEIEELFM KIAHCSTRSL THEDLELLRR ISGCQEYLDR ENFDKMWYWL YPVAFTLSRD  540
WINATWCSAS PKWIEGFVTK EEAESSLQGP RGLQQPGTFI LRFPTSRSWP HPDAGSLIVT  600
YIGSDYNLHH RMLSLDNIYS SDETVRNMKP LEDMLLAEPE LSRLGSLLQT HYEPRPQGKD  660
VFGIAQSLHY IGVEC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3836660.0FQ383666.1 Vitis vinifera clone SS0ABG1YC13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644056.10.0PREDICTED: uncharacterized protein LOC100260583 isoform X2
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLF6H2J60.0F6H2J6_VITVI; Uncharacterized protein
STRINGVIT_19s0014g00140.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]