PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013979001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 329aa    MW: 36770 Da    PI: 9.2481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013979001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-0892139146
                        TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 
                        +g+WT eEd++  ++ +q  g+  +Wk ++ + g+ R++k+c++rw++
  GSVIVT01013979001  92 KGPWTVEEDQKSPHYKEQRHGEtsSWKNVPTRAGLSRSPKSCRLRWNS 139
                        79*************99855555***********************96 PP
2Myb_DNA-binding50.93.5e-16148192248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +++++eE+  ++++ kq+G++ W+tIa++++ gRt+  +k++w+++l
  GSVIVT01013979001 148 KPFSEEEEATIIELQKQHGNK-WATIAKCLP-GRTDTGIKNFWNNHL 192
                        689******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.33287141IPR017930Myb domain
SuperFamilySSF466896.28E-887145IPR009057Homeodomain-like
SMARTSM007179.8E-491143IPR001005SANT/Myb domain
PfamPF002491.2E-692139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1593150IPR009057Homeodomain-like
CDDcd001671.88E-494141No hitNo description
SuperFamilySSF466891.79E-21127199IPR009057Homeodomain-like
PROSITE profilePS5129421.597142196IPR017930Myb domain
SMARTSM007171.6E-14146194IPR001005SANT/Myb domain
PfamPF002495.8E-14148192IPR001005SANT/Myb domain
CDDcd001676.46E-12149192No hitNo description
Gene3DG3DSA:1.10.10.608.1E-22151196IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASGMHVGVN KKMVSKTKSI MEIWSEPTST PTFFLKSVLT SPLILFFPFF ILLGPRRTLY  60
ILPSSHLHIF LISIFLWKMG RAPCCDKNGL KKGPWTVEED QKSPHYKEQR HGETSSWKNV  120
PTRAGLSRSP KSCRLRWNSK LKPGINEKPF SEEEEATIIE LQKQHGNKWA TIAKCLPGRT  180
DTGIKNFWNN HLKKKLSKKE TPSLVTQTPW PQLLDTADLL TCALNDPRDE VSKLHSDASF  240
AWNPRHGHGL HPTDEELLTS PSPLPPQTPS FNYQQTMEDP QVCTRNPDGI GSRPASIPNT  300
SSIPAPVSAS LEPSKADQVE EIVEGHPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-19901975109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.184064e-82fruit
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4589490.0AM458949.2 Vitis vinifera contig VV78X204386.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662323.11e-175PREDICTED: myb-related protein Zm1
TrEMBLF6I2S60.0F6I2S6_VITVI; Uncharacterized protein
STRINGVIT_16s0013g01570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-43myb domain protein 9