PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01013934001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | AP2 | ||||||||
Protein Properties | Length: 608aa MW: 67333.3 Da PI: 7.1633 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 180 | 230 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + r+ lg+f ta eAa+a+++a+ k++g GSVIVT01013934001 180 HYRGVRRRP-WGKFAAEIRDS---NrRGSRVCLGTFETAIEAARAYDRAAFKMRG 230 7********.**********4...3234*************************98 PP | |||||||
2 | AP2 | 26.2 | 2.1e-08 | 261 | 286 | 30 | 55 |
AP2 30 rfslgkfgtaeeAakaaiaarkkleg 55 +++lg+f ta eAa+a+++a+ k++g GSVIVT01013934001 261 KVWLGTFETAIEAARAYDRAAFKMRG 286 79**********************98 PP | |||||||
3 | AP2 | 60.5 | 3.8e-19 | 448 | 498 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f ta eAa+a+++a+ k++g GSVIVT01013934001 448 HYRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFKMRG 498 7********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 179 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-33 | 180 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 180 | 239 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.983 | 180 | 238 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 180 | 230 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.96E-26 | 180 | 238 | No hit | No description |
PRINTS | PR00367 | 5.5E-13 | 181 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.658 | 227 | 294 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-11 | 253 | 300 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-5 | 257 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-16 | 260 | 295 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-10 | 260 | 295 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-13 | 276 | 296 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 447 | 507 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 448 | 507 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-37 | 448 | 512 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.658 | 448 | 506 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-14 | 448 | 498 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-23 | 456 | 506 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MNNFPIDIHV GINVLETTRL CLMEPPQVKH IQTNPTHSFV STIIELKILP SDPETSTETS 60 SFHICFSTTQ HSLQQLISDF ECVETFVSDV GEASQASTSE SSVSTSHIVQ VSDYLKPNEH 120 ENDSFFLHRS TSAPSGAFQF ETKSQKTSTL SQRRPPLSIS VPPPPTSQPS SAPVAGEIRH 180 YRGVRRRPWG KFAAEIRDSN RRGSRVCLGT FETAIEAARA YDRAAFKMRG SKAILNFPLE 240 AGNWSGSDPP ATSGREIVRP KVWLGTFETA IEAARAYDRA AFKMRGSKAV LNFPLEAGNW 300 SDSDPPATSI RKRERESEKE VEFPKSDSTA AAASVLGISP LTPSSWRAVW EEREMKGTIP 360 HCSSPIMGEE ASSLQLIHQL LLSDFDSMET FVSHASHSLR SSASDSSFQT ESPKPSRLSH 420 RRPPLSISLP PPPISHTSSS LDSGERRHYR GVRRRPWGKF AAEIRDPNRR GSRVWLGTFE 480 TAIEAARAYD RAAFKMRGSK AVLNFPLEAG NWSDSDPPAT SIRKRERESE SEEREQPEIK 540 VLKQEEAPPA SDSPVVAEAA NVLEASPLTP SSWRTVWEER DMEGAFHLPP LTPLSPHPWI 600 GYSRLIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-27 | 179 | 507 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-27 | 179 | 507 | 4 | 64 | ATERF1 |
3gcc_A | 3e-27 | 179 | 507 | 4 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.24489 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM463530 | 0.0 | AM463530.2 Vitis vinifera contig VV78X018242.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003634026.2 | 1e-144 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
TrEMBL | D3Y3F1 | 1e-134 | D3Y3F1_VITPS; ERF1 transcription factor | ||||
STRING | VIT_16s0013g01110.t01 | 1e-128 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 7e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01013934001 |