PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01013929001 | ||||||||
Common Name | LOC100252757, VIT_16s0013g01070, VITISV_012246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 30540 Da PI: 5.9866 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 5e-18 | 116 | 165 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp + + r++lg+f a eAa+a+++a+ k++g GSVIVT01013929001 116 YRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFEAAIEAARAYDRAAFKMRG 165 9*******.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.026 | 115 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 115 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 115 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-22 | 115 | 174 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.77E-30 | 116 | 173 | No hit | No description |
PRINTS | PR00367 | 1.6E-13 | 116 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-13 | 116 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 155 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MAEEASSLHL IHQLLLSDFE SFENLNDPSQ TSTSDSSVST SDIIPLSNYF DLHEDENNPF 60 LLHCSTSAPS GFFQFESKSP KASRLSHRRP PLSISVPLPT VSQSQGESDS GNIRLYRGVR 120 RRPWGKFAAE IRDPNRRGSR VWLGTFEAAI EAARAYDRAA FKMRGSKAIL NFPLEAGNWS 180 GSDPPAISGQ KRERERESEG RELVENKVLK KDEQSSESES TVAAAAASNS LGVSPLTPSN 240 WRAVWEEREM EGIFKLPPLT PLSPHPWLGY SQLIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 116 | 174 | 6 | 64 | ATERF1 |
3gcc_A | 4e-27 | 116 | 174 | 6 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.26703 | 0.0 | flower| pedicel| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM458179 | 0.0 | AM458179.2 Vitis vinifera contig VV79X002296.12, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282167.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A5BFX5 | 0.0 | A5BFX5_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0013g01070.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01013929001 |
Entrez Gene | 100252757 |