PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013929001
Common NameLOC100252757, VIT_16s0013g01070, VITISV_012246
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 276aa    MW: 30540 Da    PI: 5.9866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013929001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-18116165355
                AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+++AeIrdp   + +  r++lg+f  a eAa+a+++a+ k++g
  GSVIVT01013929001 116 YRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFEAAIEAARAYDRAAFKMRG 165
                        9*******.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.026115173IPR001471AP2/ERF domain
SMARTSM003801.5E-34115179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31115174IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22115174IPR016177DNA-binding domain
CDDcd000188.77E-30116173No hitNo description
PRINTSPR003671.6E-13116127IPR001471AP2/ERF domain
PfamPF008475.2E-13116165IPR001471AP2/ERF domain
PRINTSPR003671.6E-13155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAEEASSLHL IHQLLLSDFE SFENLNDPSQ TSTSDSSVST SDIIPLSNYF DLHEDENNPF  60
LLHCSTSAPS GFFQFESKSP KASRLSHRRP PLSISVPLPT VSQSQGESDS GNIRLYRGVR  120
RRPWGKFAAE IRDPNRRGSR VWLGTFEAAI EAARAYDRAA FKMRGSKAIL NFPLEAGNWS  180
GSDPPAISGQ KRERERESEG RELVENKVLK KDEQSSESES TVAAAAASNS LGVSPLTPSN  240
WRAVWEEREM EGIFKLPPLT PLSPHPWLGY SQLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27116174664ATERF1
3gcc_A4e-27116174664ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.267030.0flower| pedicel| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4581790.0AM458179.2 Vitis vinifera contig VV79X002296.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282167.10.0PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLA5BFX50.0A5BFX5_VITVI; Uncharacterized protein
STRINGVIT_16s0013g01070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-38ERF family protein