PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013923001
Common NameLOC100261260, VIT_16s0013g01050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 278aa    MW: 30915.3 Da    PI: 5.5657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-18119169255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta e a+a+++a+ k++g
  GSVIVT01013923001 119 HYRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEGARAYDRAAFKMRG 169
                        7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31118178IPR001471AP2/ERF domain
CDDcd000184.78E-30119177No hitNo description
PfamPF008471.9E-12119169IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21119178IPR016177DNA-binding domain
SMARTSM003804.0E-34119183IPR001471AP2/ERF domain
PROSITE profilePS5103223.947119177IPR001471AP2/ERF domain
PRINTSPR003671.6E-13120131IPR001471AP2/ERF domain
PRINTSPR003671.6E-13159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEEASSLHL IHQQLLFDFE SFEGFVSHVN VPSQTSTSDS SPSTSDIVPL SNFSNLHEDE  60
NNPFLLHCST SAPSGFFQFE TKSPKNSTLS HRRPPLSISV PQPTVSQSPA ESDSGDIRHY  120
RGVRRRPWGK FAAEIRDPNR RGSRVWLGTF ETAIEGARAY DRAAFKMRGS KAILNFPLEA  180
DNWSGSDPPA TSGQKRERDS ETEERQQVEM KVLKQEEHLP ESDCTLAAAS NVLGVCPLTP  240
SNWRAVWEEG DMEGMFHLPP LTPLSPHPWI AYSQLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30118182468ATERF1
3gcc_A7e-30118182468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.3080.0flower| fruit| inflorescence| leaf| pedicel| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4251230.0AM425123.2 Vitis vinifera contig VV78X102658.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281966.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotQ404784e-64ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLD7U7900.0D7U790_VITVI; Uncharacterized protein
STRINGVIT_16s0013g01050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-52ERF family protein