PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01013913001 | ||||||||
Common Name | LOC100242632, VIT_16s0013g00950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 30974.2 Da PI: 5.5734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 119 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f ta eAa+a+++a+ +++g GSVIVT01013913001 119 HYRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFEMRG 169 7********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 118 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.56E-30 | 119 | 177 | No hit | No description |
Pfam | PF00847 | 1.5E-14 | 119 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-36 | 119 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.526 | 119 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 119 | 178 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-10 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MAEEASSVHF IHQQLLFDFE AFESFVSHVN DPSQTSTSDS SASTSDINPL SNYFNPHEDE 60 NNPSLLHCST SAPSGFFQLQ TKSPKTSTLS HRRPPLSISV PQPTVSQSPA ESDSGDIRHY 120 RGVRRRPWGK FAAEIRDPNR RGSRVWLGTF ETAIEAARAY DRAAFEMRGS KAILNFPLEA 180 DNWSGSDPPA ISGRKRERDS ETEERQQVEI KVLKQEEYLP ESDSTLAAAS HVLGVSPLTP 240 SNFRAGWEER EMEGIFHLPP LTPLSPHPWI AYSQLIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 118 | 182 | 4 | 68 | ATERF1 |
3gcc_A | 2e-29 | 118 | 182 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.24429 | 0.0 | flower| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ385635 | 0.0 | FQ385635.1 Vitis vinifera clone SS0AEB31YJ20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281813.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | D7U782 | 0.0 | D7U782_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0013g00950.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 4e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01013913001 |
Entrez Gene | 100242632 |