PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013913001
Common NameLOC100242632, VIT_16s0013g00950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 278aa    MW: 30974.2 Da    PI: 5.5734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013913001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19119169255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAa+a+++a+ +++g
  GSVIVT01013913001 119 HYRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFEMRG 169
                        7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-32118178IPR001471AP2/ERF domain
CDDcd000182.56E-30119177No hitNo description
PfamPF008471.5E-14119169IPR001471AP2/ERF domain
SMARTSM003806.2E-36119183IPR001471AP2/ERF domain
PROSITE profilePS5103224.526119177IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23119178IPR016177DNA-binding domain
PRINTSPR003671.7E-10120131IPR001471AP2/ERF domain
PRINTSPR003671.7E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEEASSVHF IHQQLLFDFE AFESFVSHVN DPSQTSTSDS SASTSDINPL SNYFNPHEDE  60
NNPSLLHCST SAPSGFFQLQ TKSPKTSTLS HRRPPLSISV PQPTVSQSPA ESDSGDIRHY  120
RGVRRRPWGK FAAEIRDPNR RGSRVWLGTF ETAIEAARAY DRAAFEMRGS KAILNFPLEA  180
DNWSGSDPPA ISGRKRERDS ETEERQQVEI KVLKQEEYLP ESDSTLAAAS HVLGVSPLTP  240
SNFRAGWEER EMEGIFHLPP LTPLSPHPWI AYSQLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29118182468ATERF1
3gcc_A2e-29118182468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.244290.0flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3856350.0FQ385635.1 Vitis vinifera clone SS0AEB31YJ20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281813.10.0PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLD7U7820.0D7U782_VITVI; Uncharacterized protein
STRINGVIT_16s0013g00950.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-40ERF family protein