PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013790001
Common NameLOC100246480, VIT_01s0127g00210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 319aa    MW: 36294.8 Da    PI: 4.5424
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013790001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-092602952055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  GSVIVT01013790001 260 YKWPYPTEADKIALAETTGLDQKQINNWFINQRKRH 295
                        4679*****************************885 PP
2ELK28.24.4e-10215236122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++Llr ++g+++sLk EFs
  GSVIVT01013790001 215 ELKERLLRRFGGRISSLKLEFS 236
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-2378122IPR005540KNOX1
PfamPF037901.7E-2280121IPR005540KNOX1
SMARTSM012565.1E-27128179IPR005541KNOX2
PfamPF037911.5E-24132178IPR005541KNOX2
SMARTSM011883.3E-5215236IPR005539ELK domain
PROSITE profilePS5121310.004215235IPR005539ELK domain
PfamPF037892.0E-7215236IPR005539ELK domain
PROSITE profilePS5007112.795235298IPR001356Homeobox domain
SuperFamilySSF466891.2E-19236311IPR009057Homeodomain-like
SMARTSM003893.7E-13237302IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-28240299IPR009057Homeodomain-like
CDDcd000861.73E-12247299No hitNo description
PfamPF059203.1E-17255294IPR008422Homeobox KN domain
PROSITE patternPS000270273296IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEEVYGLNST SDYSDKVLMS PENLILPADY QSFFSSAAAF RDYRIPVFGS NELISVASAI  60
SETASITPEI QREEDVSSVI KAKIASHPCY PRLLEAYIDC QKVGAPPEIA CLLDEIRREN  120
DVCKRDAVST CLGADPELDE FMETYCDMLE KYKSDLARPF DEATTFLNKI EMQLGNLCND  180
ASIRSLPDEA VVSSDEDFSG GEEVQEAQPR GEDQELKERL LRRFGGRISS LKLEFSKKKK  240
KGKLPKEARQ TLLEWWNLHY KWPYPTEADK IALAETTGLD QKQINNWFIN QRKRHWKPSE  300
NMQFAVMDNH SGQFFTDD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.113750.0inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4354391e-169AM435439.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X079149.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263313.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-151KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7TDJ70.0D7TDJ7_VITVI; Uncharacterized protein
STRINGVIT_01s0127g00210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-144KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]