PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013684001
Common NameLOC100252776, VIT_18s0001g02210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 196aa    MW: 22878.7 Da    PI: 6.2511
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013684001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.7e-081258145
                       TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       r  WT  +d+++ +a + ++ +   +W +Ia+ ++ g+t+++ k+++ 
  GSVIVT01013684001 12 RTHWTRLDDKIFEQALAIFPEEmpdRWLSIAQQLP-GKTPEDMKLHYE 58
                       567*****************99*************.**********95 PP
2Myb_DNA-binding409.1e-1379123347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+ E+ l++ +  ++G+g+W++I+r++  +Rt+ q+ s+ qk+
  GSVIVT01013684001  79 PWTEVEHRLFLSGLVRFGKGDWRSISRHVVITRTPTQVASHAQKF 123
                        8*****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.01E-11773IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-5959IPR009057Homeodomain-like
PROSITE profilePS512937.1181065IPR017884SANT domain
SMARTSM007172.2E-61163IPR001005SANT/Myb domain
PfamPF002492.9E-61258IPR001005SANT/Myb domain
CDDcd001671.46E-61561No hitNo description
PROSITE profilePS5129415.44872128IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-973127IPR009057Homeodomain-like
SuperFamilySSF466895.46E-1574129IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-1575127IPR006447Myb domain, plants
SMARTSM007174.8E-1076126IPR001005SANT/Myb domain
PfamPF002497.4E-1179122IPR001005SANT/Myb domain
CDDcd001672.62E-879123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDCDPFPSQL IRTHWTRLDD KIFEQALAIF PEEMPDRWLS IAQQLPGKTP EDMKLHYELL  60
VEDVTNIENG NVERKKGTPW TEVEHRLFLS GLVRFGKGDW RSISRHVVIT RTPTQVASHA  120
QKFYLRQNSV KKERKRSSIH DINTIENFSP SDFPNNFSGQ QKDEVIDNLD NFSDLPNNFP  180
DQQQVNKFNL LKERE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1615721168RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4540121e-167AM454012.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X149730.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264197.11e-129PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN64e-47SRM1_ARATH; Transcription factor SRM1
TrEMBLF6HJD11e-127F6HJD1_VITVI; Uncharacterized protein
STRINGVIT_18s0001g02210.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-58MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]