PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013452001
Common NameLOC100240978, VIT_18s0122g00380
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 922aa    MW: 102269 Da    PI: 8.6394
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013452001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.3e-41121198178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C++dls+ak+yhrrhkvCe+hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  GSVIVT01013452001 121 MCQVDNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 198
                        6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-34115183IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.872119196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37120200IPR004333Transcription factor, SBP-box
PfamPF031101.4E-29122195IPR004333Transcription factor, SBP-box
CDDcd002043.71E-5679815No hitNo description
Gene3DG3DSA:1.25.40.202.2E-4717818IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.13E-6720816IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MEEVGAQVAP PIFIHQTLSS RFHEAVPMAK KRDLPYPSSN FQHQHPQRFQ NPRDNWNPKV  60
WDWDSVRFVA NPLESELLRL GTATPSLRLK LGGGLSSIEE PVSRPSKRVR SGSPGSSSYP  120
MCQVDNCRED LSNAKDYHRR HKVCEMHSKS TKALVGKQMQ RFCQQCSRFH PLSEFDEGKR  180
SCRRRLAGHN RRRRKTQPED VSSRLLLPGN RDNTGNRNLD IVNLLTALAR TQGNNEVKSA  240
NNSSVPDRDQ LIQILSKLNS LPLPADFAAK LPISGSLNRN TPGQSSSEHQ NRLNGKTSSP  300
STMDLLAVLS ATLAASAPDA LAFLSQRSSQ SSDSEKTNYQ SPMEDSDCQY FSSDSSNPME  360
ERSPSSSPPV VQKLGADNGA VQSFPYQAGY TSSSGSDHSP SSLNSDAQDR TGRIIFKLFD  420
KDPSHFPGTL RTEIYNWLAH SPSEMESYIR PGCVVLSVYA SMSSAAWEQL EENLLHRVNS  480
LVQDSDSDFW RNGRFLVHTG RELASHKDGK IRLCKSWRTW NSPELISVSP LAVVGGQETS  540
FLLKGRNLAN PGTKIHCTYM GGYTSKEVPG LARQGTVYDE ISFGSFKIND AIPSVLGRCF  600
IEVENGFRGN SFPVIVADAT ICKELRLLES EFDEEAKVSR EEVLHFLNEL GWLFQRKFSM  660
LAGPDYSLAR FKFLFTFSVE RDCCALVKTL LDILVERNLG SDGLSSKSLE TLSEVQLLSR  720
AVKRRYRKMV DLLIHYSVAS SSSKKYIFPP NLVGAGGITP LHLAACTAGS DDIIDALTSD  780
PQEIGLHSWN SLLDASGQSP YAYAMMRNNH SYNRLVARKL ADRRNGQVSL SIENAMEQPW  840
PKVGQEQHFG QGRSSCAKCA VVAAKYSRRM PGSQGLLHRP YIHSMLAIAA VCVCVCLFLR  900
GSPDIGLVAP FKWENLDYGT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31112195184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1719724RAVKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.38530.0bud| cell culture| fruit| inflorescence| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3842950.0FQ384295.1 Vitis vinifera clone SS0AAG20YM14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273784.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLF6I6X10.0F6I6X1_VITVI; Uncharacterized protein
STRINGVIT_18s0122g00380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP71381115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]