PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013443001
Common NameVIT_18s0122g00500
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 193aa    MW: 21663.2 Da    PI: 10.3729
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013443001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.53e-082468246
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                       +++k+ rr  +NR AA rsR+RKk ++  Le k+  Le+e ++L 
  GSVIVT01013443001 24 QASKKRRRQLRNRDAAVRSRERKKTYVRDLELKSRYLESECRRLG 68
                       6789************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.00252087IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.8872567IPR004827Basic-leucine zipper domain
PfamPF001701.2E-62572IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-102787No hitNo description
SuperFamilySSF579592.17E-102785No hitNo description
CDDcd147048.76E-132879No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MPMLTLPING YNGNAQNDGE DEDQASKKRR RQLRNRDAAV RSRERKKTYV RDLELKSRYL  60
ESECRRLGHL LQCCFAENQT LRLHLQNEKA FGASVTKQES AVLLMESLLL GSLLWFLGIM  120
CLALSLPVQF QLSREAVPMG SVEDKGQKSV APRGPGSKIF ELWLLQSYVK SKRCKASKTK  180
MKPGSLAHGV LV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12746KRRRQLRNRDAAVRSRERKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.75400.0bud| cell culture| flower| fruit| inflorescence| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3801620.0FQ380162.1 Vitis vinifera clone SS0ADG1YD24.
GenBankFQ3801660.0FQ380166.1 Vitis vinifera clone SS0ADG1YD20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634336.31e-133PREDICTED: bZIP transcription factor 60
TrEMBLF6I6W61e-131F6I6W6_VITVI; Uncharacterized protein
STRINGVIT_18s0122g00500.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.17e-15basic region/leucine zipper motif 60