PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013370001
Common NameVIT_18s0122g01290
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Nin-like
Protein Properties Length: 750aa    MW: 82827.2 Da    PI: 6.7085
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013370001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK941e-29509559252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        e++i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  GSVIVT01013370001 509 EQTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 559
                        899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.507498579IPR003035RWP-RK domain
PfamPF020428.5E-26511559IPR003035RWP-RK domain
SuperFamilySSF542771.18E-24643740No hitNo description
Gene3DG3DSA:3.10.20.2408.8E-22652733No hitNo description
PROSITE profilePS5174523.3653736IPR000270PB1 domain
SMARTSM006662.1E-25653736IPR000270PB1 domain
CDDcd064077.74E-40655735No hitNo description
PfamPF005648.7E-17655735IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDLDFMDELF LGGCWLETTD GSEFLLQSPS NSGSVFDPSS LWPTFGSNNS LSQSMTNVAG  60
YPVQSENYLM DDFDLSRRWW IRPKSSPGPS STVMERLIRA LSYIRGSTKN KDALIQIWVP  120
VNRGGRRVLT TNDQPFSLDP SCPRLARYRD ISVSYQFSAE EDSNELAGLP GRVFLGKVPE  180
WTPDVRFFRS EEYPRVDYAQ HFDVRGTLAL PVFEQGSQTC LGVIEVVMTT QKSNYRPELE  240
SVCKALEAVD LRSSEVLSTR NVKACNKFYQ AALPEILEVL TSACGTHGLP LAQTWVPCIQ  300
QGKWGSRHTD GNYIHCVSTV DSACCVADPR TQGFHEACSE HHLLKGQGIA GRAFTTNEPC  360
FSADITSFSK TQYPLSHHAR MFGLCAAVAI RLRSIHVPVS DFVLEFFLPV DCRDPEEQKG  420
MLCSLSIIIQ KVCRSLRVVT DKELEGETPS LVSELTVLSD GSPGREETQK AQQNSSQQGS  480
FDCRDDSTFG KSSLSSVGKT GERRRSKAEQ TITLQVLQQY FAGSLKDAAK SIGVCPTTLK  540
RICRQHGIKR WPSRKIKKVG HSLHKIQLVI DSVKGASGAF QIGNFYSKFP ELASPDVQPE  600
GDNSSTGVAA SKSLSSSCSP SSSSSQCCST GTQEHPSTSI PQSGSLASQE GDAWRVKVTY  660
GDEKIRFRMQ SNWGLKDLRQ EIGRRFNIDD SSGFHLKYLD DDLEWVLLTC EADFEECKDI  720
CGSSQNHVIR LAIHQISHHL GSSLGSTCP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.157750.0fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4315700.0AM431570.2 Vitis vinifera contig VV78X242359.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663967.10.0PREDICTED: protein NLP4
RefseqXP_010663969.10.0PREDICTED: protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLF6I6T30.0F6I6T3_VITVI; Uncharacterized protein
STRINGVIT_18s0122g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein