PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01013319001 | ||||||||
Common Name | VIT_12s0121g00120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 260aa MW: 29219.9 Da PI: 7.6423 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.3 | 1.8e-12 | 4 | 31 | 8 | 35 |
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 +TplWR+gp ++ LCnaCG ++r +g+ GSVIVT01013319001 4 ETPLWRNGPPEKPVLCNACGSRWRIRGT 31 8********88888**********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00202 | 7.37E-11 | 2 | 31 | No hit | No description |
SMART | SM00401 | 0.0013 | 2 | 48 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-7 | 3 | 34 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-9 | 3 | 32 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.9E-10 | 4 | 31 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVAETPLWRN GPPEKPVLCN ACGSRWRIRG TLEDYIPKHA LAVMTSHARD RTQNPHQHKL 60 PLERTFVSHP NIMVHNESHS DTKENAIRYD DPYSSGLGDN ASHRSSSGSS SISCSDHSHT 120 ELLSSIPCSN NWNSNVPSRK RSLVQYRNLT FVEKLQKDLY DILQNEEPTT LSECPDGNLI 180 YYENSGNPEI GLGVLLLKPP IVSAQQESKT FKSEGKMTSS SWQVSSLFFL FVYLFFMSSH 240 LVSPIVRNDT KQSFKIIPV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM456646 | 0.0 | AM456646.2 Vitis vinifera contig VV78X231457.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019078933.1 | 1e-130 | PREDICTED: GATA transcription factor 27 | ||||
TrEMBL | D7UD68 | 0.0 | D7UD68_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0121g00120.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 6e-28 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01013319001 |