PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013190001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LSD
Protein Properties Length: 231aa    MW: 24966.3 Da    PI: 9.698
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013190001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.96.8e-13113137125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        C+gCr+lL YP GA+sV+Ca+C+ V
  GSVIVT01013190001 113 CSGCRNLLLYPVGAKSVCCAVCNVV 137
                        ***********************98 PP
2zf-LSD145.61.2e-14152176125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        CggC+tlL+Y rGA+sV+C++C+t+
  GSVIVT01013190001 152 CGGCHTLLMYIRGATSVQCSCCHTI 176
                        ***********************97 PP
3zf-LSD140.93.3e-13190214125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr lL+Y +GA+sV+Ca+C++V
  GSVIVT01013190001 190 CGNCRMLLMYQYGARSVKCAVCNFV 214
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.5E-4103211No hitNo description
SuperFamilySSF486954.33E-5109211IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.1E-11110140IPR005735Zinc finger, LSD1-type
PfamPF069439.3E-10113137IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-14149178IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-12152176IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.1E-12187217IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-12190214IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTLRKGKVSY KGKGKKKKLS LDTTFSHSAF VRLYPLSLSL SLSLFFSLCN LQRNGEDGRN  60
IDAVWAKGRK LLRAWQRKHT LARITMPVPL APYPTPPVPF TQPANGAQSQ LVCSGCRNLL  120
LYPVGAKSVC CAVCNVVTAV PLPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTINLAL  180
EANQVAHVNC GNCRMLLMYQ YGARSVKCAV CNFVTSVGAS TSSTEHKFNC *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.154470.0fruit
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3948500.0FQ394850.1 Vitis vinifera clone SS0AFA19YD11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281099.11e-102PREDICTED: protein LOL1 isoform X2
RefseqXP_010663767.11e-102PREDICTED: protein LOL1 isoform X2
RefseqXP_010663773.11e-102PREDICTED: protein LOL1 isoform X2
RefseqXP_010663776.11e-102PREDICTED: protein LOL1 isoform X2
SwissprotQ93ZB11e-78LOL1_ARATH; Protein LOL1
TrEMBLF6HTB11e-128F6HTB1_VITVI; Uncharacterized protein
STRINGVIT_02s0012g00990.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.39e-70lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]