PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013182001
Common NameLOC100255731, VIT_02s0012g01040
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 366aa    MW: 41109.5 Da    PI: 4.5281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013182001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.8e-5461341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv +yLk+kveg+k+el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+
  GSVIVT01013182001   6 LPPGFRFHPTDEELVGYYLKRKVEGQKFEL-EVIPVIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDR 96 
                        79****************************.99**************96434556788********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++ +++++g +ktLvfy+grap g +tdWvmheyrl
  GSVIVT01013182001  97 KVVACQSTVIGYRKTLVFYRGRAPLGDRTDWVMHEYRL 134
                        ****9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-614156IPR003441NAC domain
PROSITE profilePS5100559.4416156IPR003441NAC domain
PfamPF023652.5E-307134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLKRKVEG QKFELEVIPV IDLYKFDPWE LPDKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATRAGYWK ATGKDRKVVA CQSTVIGYRK TLVFYRGRAP  120
LGDRTDWVMH EYRLCDDPSQ GSGFQGAFAL CRVVKKNDPT QKSSDFHGEA KGKQVGSSSS  180
NGDFTSAAIS NEILSISDNI PSQASHAYNE SNYSSPMASP YEAARPVDFE LSSKGTNPTD  240
FWVSPDLILD SSKDYQQGQE TVSEFVPQYD FANSMSSWNP YSEISPCSSY SNFPGEVEFA  300
DDFSRIGCMS PYSGDPNYMG FYGNEDVPYE GFENQVPICR QESGDESFGE CSGLWLQEDN  360
LVIVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B4e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A4e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B4e-54516216171NO APICAL MERISTEM PROTEIN
4dul_A4e-54516216171NAC domain-containing protein 19
4dul_B4e-54516216171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.5140.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4309451e-180AM430945.2 Vitis vinifera contig VV78X241223.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280894.20.0PREDICTED: NAC domain-containing protein 86
SwissprotO496976e-99NAC71_ARATH; NAC domain-containing protein 71
TrEMBLD7TTY90.0D7TTY9_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-101NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]