PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01013126001

Common Name

LOC100243804, VIT_02s0012g01650

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 304aa MW: 34081.3 Da PI: 7.7918

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01013126001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lvd++k++G g+W++ ++ g++R++k+c++rw +yl GSVIVT01013126001 14 KGPWTPDEDQKLVDYIKRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ ++++++ lG++ W++Ia +++ gRt++++k++w+++ GSVIVT01013126001 67 RGKFSDEEERIIIKLHSVLGNK-WSRIAVHLP-GRTDNEIKNFWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.112	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.11E-31	12	108	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.486	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-26	65	115	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MVRSPCCDDG SLKKGPWTPD EDQKLVDYIK RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SDEEERIIIK LHSVLGNKWS RIAVHLPGRT DNEIKNFWNT HVKKKFLQMG 120 LDPNTHQPRA DLNSLVNLSQ LLATANFSNL TSPLEDALRL QTDATRLTKI QLLQNILQII 180 NTGSTLSRNI EGASHQWSLT PGSHNDYQAI SNSWACIDGG FGSEVHNFNN NCSSSSYDIR 240 AEQPLPALVS VSPECSSVNQ TESKMNLPCI STHSSTSNIF EAWGELMDDE TSVSYWKDIL 300 GQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-31	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM485576	0.0	AM485576.2 Vitis vinifera contig VV79X000593.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277571.3	0.0	PREDICTED: transcription factor MYB39
Swissprot	Q9S9Z2	3e-86	MYB93_ARATH; Transcription factor MYB93
TrEMBL	F6HT69	0.0	F6HT69_VITVI; Uncharacterized protein
STRING	VIT_02s0012g01650.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	6e-86	myb domain protein 9

Link Out ? help Back to Top
Phytozome	GSVIVT01013126001
Entrez Gene	100243804

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]