PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012897001
Common NameLOC100246520, VIT_11s0118g00800
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 414aa    MW: 45993 Da    PI: 6.0815
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012897001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.9e-073523842254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +yp++e++++L +++gL  +q+ +WF N+R +
  GSVIVT01012897001 352 WPYPTEEDKARLVQETGLHLKQINNWFINQRKR 384
                        59*****************************87 PP
2ELK28.92.7e-10305326122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+++++++++E++
  GSVIVT01012897001 305 ELKHELKQGYKEKIVDIREEIL 326
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-19141185IPR005540KNOX1
PfamPF037909.3E-18143184IPR005540KNOX1
SMARTSM012569.7E-27193248IPR005541KNOX2
PfamPF037916.9E-20197247IPR005541KNOX2
SMARTSM011886.1E-4305326IPR005539ELK domain
PfamPF037899.5E-7305326IPR005539ELK domain
PROSITE profilePS512139.969305325IPR005539ELK domain
PROSITE profilePS5007111.515325388IPR001356Homeobox domain
SuperFamilySSF466897.27E-16327390IPR009057Homeodomain-like
SMARTSM003895.4E-11327392IPR001356Homeobox domain
CDDcd000865.63E-11328389No hitNo description
Gene3DG3DSA:1.10.10.608.6E-25332389IPR009057Homeodomain-like
PfamPF059201.6E-17345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAFHNQLSHD MALQHFTDSH LTENTAVLRG ILPEQLGQSS SDGAGKPPSH QQLGGGGGGG  60
GPTWLNNAIL RQQSQYADGS FLHLQTNSDS TSSPATATTT TNQWLSRSMS NKRNGGNNQN  120
RGDNNGEDML DCDSGGNWEN ARYKADILAH PLYEQLLSAH VSCLRIATPV DQLPRIDAQL  180
AQSQGVVTKY SVLANQPLDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE  240
QSLQSLTGVS PGEGTGATMS DDEDDQADSE INLFDGSLDG PDSMGFGPLV PTETERSLME  300
RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS LLKAWWQSHS KWPYPTEEDK  360
ARLVQETGLH LKQINNWFIN QRKRNWHSNP SSSAVLKTKR KSNAGEINND HFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.71130.0bud| fruit| inflorescence| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3925350.0FQ392535.1 Vitis vinifera clone SS0AFA5YE12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656543.10.0PREDICTED: homeobox protein knotted-1-like 13 isoform X2
SwissprotP480001e-178KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLF6HCJ00.0F6HCJ0_VITVI; Uncharacterized protein
STRINGVIT_11s0118g00800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-175KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]