PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01012523001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 189aa MW: 20541.5 Da PI: 4.0493 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49 | 8.5e-16 | 22 | 58 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ GSVIVT01012523001 22 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 58 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-9 | 16 | 69 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-12 | 20 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 20 | 63 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.76E-15 | 21 | 65 | No hit | No description |
Pfam | PF00320 | 8.3E-14 | 22 | 58 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 22 | 49 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MATGNWDPSS GTPCPEYVFR RCQHCGISEK STPAMRRGPA GPRSLCNACG LMWANKGTLR 60 DLSKGSRMIP FGQDELETSD DIKPVTMERE KAYGNHDELG SSEEMKPVPL ESGNPTTGQQ 120 NEQDLLETAV ALVDHLPVPV DNSSINPDEQ ENTEVLANVS GTDFEIPTNF DEQVDVGDSN 180 MATDWPEN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM432605 | 8e-55 | AM432605.2 Vitis vinifera contig VV78X221945.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010645171.1 | 1e-138 | PREDICTED: GATA transcription factor 24 isoform X2 | ||||
TrEMBL | A0A2I4F5G6 | 4e-75 | A0A2I4F5G6_JUGRE; GATA transcription factor 19-like | ||||
STRING | XP_008237241.1 | 7e-73 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 4e-24 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01012523001 |